Evidence map›Paper›PMID 17368442›Full record

ArticleDevelopmental biology2007

Transcriptome profiling of the C. elegans Rb ortholog reveals diverse developmental roles.

Natalia V Kirienko, David S Fay

Abstract readComparative Study
In one paragraph

Article in Developmental biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Review
  2. Large Yellow Croaker (International journal of molecular sciences · 2025
    Article
  3. Article
  4. Article
  5. bioRxiv : the preprint server for biology · 2024
    Article
  6. Article
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  10. Article
  11. Review
  12. The Inducible Response of the NematodeFrontiers in microbiology · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Natalia V KirienkoDepartment of Molecular Biology, College of Agriculture, University of Wyoming, Dept. 3944, 1000 E. University Avenue, Laramie, WY 82071, USA.
David S Fay

Funding

Developmental Functions of Rb family proteinsR01GM066868 · NIGMS · UNIVERSITY OF WYOMING · PI FAY, DAVID S · 2004 to 2019
$4.1M
NIGMS NIH HHS R01 GM066868
6 · The paper itself

Abstract

LIN-35 is the single C. elegans ortholog of the mammalian pocket protein family members, pRb, p107, and p130. To gain insight into the roles of pocket proteins during development, a microarray analysis was performed with lin-35 mutants. Stage-specific regulation patterns were revealed, indicating that LIN-35 plays diverse roles at distinct developmental stages. LIN-35 was found to repress the expression of many genes involved in cell proliferation in larvae, an activity that is carried out in conjunction with E2F. In addition, LIN-35 was found to regulate neuronal genes during embryogenesis and targets of the intestinal-specific GATA transcription factor, ELT-2, at multiple developmental stages. Additional findings suggest that LIN-35 functions in cell cycle regulation in embryos in a manner that is independent of E2F. A comparison of LIN-35-regulated genes with known fly and mammalian pocket protein targets revealed a high degree of overlap, indicating strong conservation of pocket protein functions in diverse phyla. Based on microarray results and our refinement of the C. elegans E2F consensus sequence, we were able to generate a comprehensive list of putative E2F-regulated genes in C. elegans. These results implicate a large number of genes previously unconnected to cell cycle control as having potential roles in this process.

Indexed as

Amino Acid MotifsAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsE2F Transcription FactorsGene Expression ProfilingGene Expression Regulation, DevelopmentalOligonucleotide Array Sequence AnalysisRepressor ProteinsRetinoblastoma ProteinCaenorhabditis elegans ProteinsE2F Transcription Factorslin-35 protein, C elegansRepressor ProteinsRetinoblastoma Protein

Identifiers

PMID17368442
PMCPMC2680605

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.