Evidence map›Paper›PMID 17367759›Full record

ArticleBiochemical and biophysical research communications2007

TASR-1 regulates alternative splicing of collagen genes in chondrogenic cells.

Hiroshi Matsushita, Michael L Blackburn, Eric Klineberg, Anna Zielinska-Kwiatkowska, Mark E Bolander, Gobinda Sarkar, Larry J Suva, Howard A Chansky, Liu Yang

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hiroshi MatsushitaDepartment of Pathology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.
Michael L Blackburn
Eric Klineberg
Anna Zielinska-Kwiatkowska
Mark E Bolander
Gobinda Sarkar
Larry J Suva
Howard A Chansky
Liu Yang
University of Arkansas for Medical Sciences · USUniversity of Washington · USMayo Clinic in Florida · US

Funding

CHONDROGENESIS AND HISTONE MODIFICATION ENZYMESR01AR051455 · NIAMS · UNIVERSITY OF WASHINGTON · PI YANG, LIU · 2004 to 2007
$1.1M
NIAMS NIH HHS R01 AR051455NIAMS NIH HHS R01 AR051455-04
6 · The paper itself

Abstract

During the differentiation of chondroprogenitors into mature chondrocytes, the alternative splicing of collagen genes switches from longer isoforms to shorter ones. To investigate the underlying mechanisms, we infected mouse ATDC5 chondroprogenitor cells with retrovirus for stable expression of two closely related SR splicing factors. RT-PCR analysis revealed that TASR-1, but not TASR-2, influenced alternative splicing of type II and type XI collagens in ATDC5 cells. The effect of TASR-1 on splicing could be reversed with the addition of insulin. Results from our microarray analysis of ATDC5 cells showed that TASR-1 and TASR-2 differentially affect genes involved in the differentiation of chondrocytes. Of special interest is the finding that TASR-1 could down-regulate expression of type X collagen, a hallmark of hypertrophic chondrocytes. Immunohistostaining demonstrated that TASR-1 protein is more abundantly expressed than TASR-2 in mouse articular chondrocytes, raising the possibility that TASR-1 might be involved in phenotype maintenance of articular chondrocytes.

Indexed as

Alternative SplicingAnimalsCell Cycle ProteinsChondrocytesChondrogenesisCollagen Type IIMiceNeoplasm ProteinsRepressor ProteinsRNA-Binding ProteinsCell Cycle ProteinsCollagen Type IIFusip1 protein, mouseNeoplasm ProteinsRepressor ProteinsRNA-Binding Proteins

Identifiers

PMID17367759
PMCPMC1887518
OpenAlexW2074941899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.