Evidence map›Paper›PMID 17360619›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

RNA-binding proteins that inhibit RNA virus infection.

Jian Zhu, Kodetham Gopinath, Ayaluru Murali, Guanghui Yi, S Diane Hayward, Heng Zhu, Cheng Kao

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Contribution of yeast models to virus research.Applied microbiology and biotechnology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Developments and Applications of Functional Protein Microarrays.Molecular & cellular proteomics : MCP · 2020
    Review
  13. Host factors against plant viruses.Molecular plant pathology · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Systematic Identification ofMolecular & cellular proteomics : MCP · 2017
    Article
  18. Review
  19. Article
  20. Protein Array-based Approaches for Biomarker Discovery in Cancer.Genomics, proteomics & bioinformatics · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jian ZhuDepartment of Pharmacology and Molecular Sciences and High Throughput Biology Center, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Kodetham Gopinath
Ayaluru Murali
Guanghui Yi
S Diane Hayward
Heng Zhu
Cheng Kao
Texas A&M University · USLaboratory of Molecular Genetics · PLJohns Hopkins University · US

Funding

TCP5: ACTIVE SITE LABELING REAGENT FOR ACETYLTRANSFERASESU54RR020839 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2004 to 2011
$27.4M
DNA-Binding Activity of Human Transcription FactorsR01GM076102 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ZHU, HENG · 2006 to 2014
$2.6M
Structural Protein Networks ("Interactome") in HerpesvirusesR21AI070740 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ZHU, HENG · 2006 to 2007
$443k
NCRR NIH HHS U54 RR020839NCRR NIH HHS U54RR020839-01NIAID NIH HHS 1R21AI070740-01NIAID NIH HHS R21 AI070740NIGMS NIH HHS 1R01GM076102-01A1NIGMS NIH HHS R01 GM076102
6 · The paper itself

Abstract

Arrays of >5,000 Saccharomyces cerevisiae proteins were screened to identify proteins that can preferentially bind a small RNA hairpin that contains a clamped adenine motif (CAM). A CAM is required for the replication of Brome Mosaic Virus (BMV), a plant-infecting RNA virus that can replicate in S. cerevisiae. Several hits were selected for further characterization in Nicotiana benthamiana. Pseudouridine Synthase 4 (Pus4) and the Actin Patch Protein 1 (App1) modestly reduced BMV genomic plus-strand RNA accumulation, but dramatically inhibited BMV systemic spread in plants. Pus4 also prevented the encapsidation of a BMV RNA in plants and the reassembly of BMV virions in vitro. These results demonstrate the feasibility of using proteome arrays to identify specific RNA-binding proteins for antiviral activities. Furthermore, the effects of Pus4 suggest that the CAM-containing RNA motif provides a regulatory link between RNA replication and encapsidation.

Indexed as

Amino Acid MotifsBlotting, NorthernBromovirusIntramolecular TransferasesMicrofilament ProteinsNicotianaProtein Array AnalysisRNA-Binding ProteinsRNA, ViralSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVirus AssemblyVirus ReplicationAPP1 protein, S cerevisiaeIntramolecular TransferasesMicrofilament ProteinsRNA-Binding ProteinsRNA, ViralSaccharomyces cerevisiae ProteinstRNA-pseudouridine synthase I

Identifiers

PMID17360619
PMCPMC1805585
OpenAlexW2034145179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.