Evidence map›Paper›PMID 17360576›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Regulation of the stringent response is the essential function of the conserved bacterial G protein CgtA in Vibrio cholerae.

David M Raskin, Nicholas Judson, John J Mekalanos

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. YbiB: a novel interactor of the GTPase ObgE.Nucleic acids research · 2023
    Article
  7. Sequestration of a dual function DNA-binding protein byProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. The expanded specificity and physiological role of a widespread N-degron recognin.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Review
  16. Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae.Database : the journal of biological databases and curation · 2019
    Article
  17. Rsd balances (p)ppGpp level by stimulating the hydrolase activity of SpoT during carbon source downshift inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Linking glucose metabolism to the stringent response through the PTS.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

David M RaskinDepartment of Microbiology and Molecular Genetics, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, USA.
Nicholas Judson
John J Mekalanos
Harvard University · US

Funding

COORDINATE REGULATION OF BACTERIAL VIRULENCE FACTORSR01AI026289 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MEKALANOS, JOHN JOSEPH · 1988 to 2018
$8.3M
CONFERENCE--MOLECULAR BIOLOGY OF HEPATITIS B VIRUSESR13AI040053 · NIAID · COLD SPRING HARBOR LABORATORY · PI GRODZICKER, TERRI I. · 1996 to 1996
–
NIAID NIH HHS AI 026289NIAID NIH HHS AI 40053NIAID NIH HHS N01 AI040053NIAID NIH HHS R01 AI026289
6 · The paper itself

Abstract

The gene encoding the conserved bacterial G protein CgtA (Obg) is essential for viability in every organism in which it has been studied. CgtA has been reported to be involved in several diverse bacterial functions, including ribosome assembly, DNA repair, sporulation, and morphological development. However, none of these functions have been identified as essential. Here we show that depletion of CgtA in Vibrio cholerae causes global changes in gene expression that are consistent with induction of a classical low nutrient stress response or "stringent" response. We show that depletion of CgtA leads to increased ppGpp levels that correlate with induction of the global stress response and cessation of growth. The enzyme RelA is responsible for synthesis of the alarmone ppGpp during the stringent response. We show that CgtA is no longer essential in a relA deletion mutant and thus conclude that the essentiality of CgtA is directly linked to its ability to affect ppGpp levels. The enzyme SpoT degrades ppGpp, and here we show that SpoT is essential in a RelA+ CgtA+ background but not in a relA deletion mutant. We also confirmed that CgtA interacts with SpoT in a two-hybrid assay. We suggest that the essential function of CgtA is as a repressor of the stringent response that acts by regulating SpoT activity to maintain low ppGpp levels when bacteria are growing in a nutrient-rich environment.

Indexed as

Gene Expression RegulationGene Expression Regulation, BacterialBacterial ProteinsCholeraGenes, BacterialGTP-Binding ProteinsLigasesModels, BiologicalMonomeric GTP-Binding ProteinsMutagenesisPyrophosphatasesTranscription, GeneticTwo-Hybrid System TechniquesVibrio choleraeBacterial ProteinsCgtA protein, bacteriaGTP-Binding Proteinsguanosine-3',5'-bis(diphosphate) 3'-pyrophosphataseguanosine 3',5'-polyphosphate synthetasesLigasesMonomeric GTP-Binding ProteinsPyrophosphatases

Identifiers

PMID17360576
PMCPMC1838653
OpenAlexW2075532221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.