Evidence map›Paper›PMID 17360528›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Domain-swapped dimerization of the HIV-1 capsid C-terminal domain.

Dmitri Ivanov, Oleg V Tsodikov, Jeremy Kasanov, Tom Ellenberger, Gerhard Wagner, Tucker Collins

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Amino-acid composition after loop deletion drives domain swapping.Protein science : a publication of the Protein Society · 2017
    Article
  9. Article
  10. Article
  11. Article
  12. MAS NMR of HIV-1 protein assemblies.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2015
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Dmitri IvanovDepartment of Pathology, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA. dmitri.ivanov@hms.harvard.edu
Oleg V Tsodikov
Jeremy Kasanov
Tom Ellenberger
Gerhard Wagner
Tucker Collins
Harvard University · USHarvard University Press · USUniversity of Michigan–Ann Arbor · USWashington University in St. Louis · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
STRUCTURAL STUDIES OF DNA REPAIR PROTEINSR01GM052504 · NIGMS · WASHINGTON UNIVERSITY · PI ELLENBERGER, TOM E. · 1995 to 2011
$3.8M
TRANSCRIPTIONAL REGULATION OF PDGF BY ENDOTHELIUMR37HL035716 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI COLLINS, TUCKER O · 1996 to 2005
$1.9M
Pathobiology of the Developing Cardiovascular SystemT32HL076115 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI FLEMING, MARK D · 2005 to 2009
$970k
The SCAN Family: Characterization of ZNF174R01GM066516 · NIGMS · CHILDREN'S HOSPITAL BOSTON · PI COLLINS, TUCKER O · 2002 to 2005
$929k
Transcriptional Regulation of PDGF by EndotheliumR01HL035716 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI FLEMING, MARK D. · 1985 to 2007
$394k
NHLBI NIH HHS HL 035716NHLBI NIH HHS R01 HL035716NHLBI NIH HHS R37 HL035716NHLBI NIH HHS T32 HL 076115NHLBI NIH HHS T32 HL076115NIAID NIH HHS P30 AI060354NIGMS NIH HHS GM 066516NIGMS NIH HHS GM 47467NIGMS NIH HHS GM 52504NIGMS NIH HHS P01 GM047467NIGMS NIH HHS R01 GM052504NIGMS NIH HHS R01 GM066516
6 · The paper itself

Abstract

Assembly of the HIV and other retroviruses is primarily driven by the oligomerization of the Gag polyprotein, the major viral structural protein capable of forming virus-like particles even in the absence of all other virally encoded components. Several critical determinants of Gag oligomerization are located in the C-terminal domain of the capsid protein (CA-CTD), which encompasses the most conserved segment in the highly variable Gag protein called the major homology region (MHR). The CA-CTD is thought to function as a dimerization module, although the existing model of CA-CTD dimerization does not readily explain why the conserved residues of the MHR are essential for retroviral assembly. Here we describe an x-ray structure of a distinct domain-swapped variant of the HIV-1 CA-CTD dimer stabilized by a single amino acid deletion. In the domain-swapped structure, the MHR-containing segment forms a major part of the dimerization interface, providing a structural mechanism for the enigmatic function of the MHR in HIV assembly. Our observations suggest that swapping of the MHR segments of adjacent Gag molecules may be a critical intermediate in retroviral assembly.

Indexed as

Capsid ProteinsCrystallography, X-RayDimerizationGene Products, gagHIV-1Models, MolecularMutationProtein ConformationProtein Structure, TertiaryVirus AssemblyVirus ReplicationCapsid ProteinsGene Products, gag

Identifiers

PMID17360528
PMCPMC1838606
OpenAlexW2035350295

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.