Evidence map›Paper›PMID 17360441›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Linking pattern formation to cell-type specification: Dichaete and Ind directly repress achaete gene expression in the Drosophila CNS.

Guoyan Zhao, Grace Boekhoff-Falk, Beth A Wilson, James B Skeath

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Genetics · 2019
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Ind represses msh expression in the intermediate column of the Drosophila neuroectoderm, through direct interaction with upstream regulatory DNA.Developmental dynamics : an official publication of the American Association of Anatomists · 2009
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors.

Guoyan ZhaoProgram in Molecular Cell Biology and Department of Genetics, Washington University School of Medicine, 4566 Scott Avenue, St. Louis, MO 63110, USA.
Grace Boekhoff-Falk
Beth A Wilson
James B Skeath

Funding

PROXIMODISTAL AXIS AND TISSUE SPECIFIC GENE REGULATIONR01GM059871 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI BOEKHOFF-FALK, GRACE E · 2000 to 2004
$1.1M
NIGMS NIH HHS GM 59871NIGMS NIH HHS R01 GM059871NINDS NIH HHS NS 3657
6 · The paper itself

Abstract

Mechanisms regulating CNS pattern formation and neural precursor formation are remarkably conserved between Drosophila and vertebrates. However, to date, few direct connections have been made between genes that pattern the early CNS and those that trigger neural precursor formation. Here, we use Drosophila to link directly the function of two evolutionarily conserved regulators of CNS pattern along the dorsoventral axis, the homeodomain protein Ind and the Sox-domain protein Dichaete, to the spatial regulation of the proneural gene achaete (ac) in the embryonic CNS. We identify a minimal achaete regulatory region that recapitulates half of the wild-type ac expression pattern in the CNS and find multiple putative Dichaete-, Ind-, and Vnd-binding sites within this region. Consensus Dichaete sites are often found adjacent to those for Vnd and Ind, suggesting that Dichaete associates with Ind or Vnd on target promoters. Consistent with this finding, we observe that Dichaete can physically interact with Ind and Vnd. Finally, we demonstrate the in vivo requirement of adjacent Dichaete and Ind sites in the repression of ac gene expression in the CNS. Our data identify a direct link between the molecules that pattern the CNS and those that specify distinct cell-types.

Indexed as

Gene Expression RegulationAnimalsBase SequenceBasic Helix-Loop-Helix ProteinsBody PatterningCell LineageCentral Nervous SystemDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsHigh Mobility Group ProteinsHomeodomain ProteinsModels, BiologicalModels, GeneticMolecular Sequence DataNeuronsac protein, DrosophilaBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsD protein, DrosophilaDrosophila ProteinsHigh Mobility Group ProteinsHomeodomain ProteinsIND protein, DrosophilaSOX Transcription FactorsTranscription Factors

Identifiers

PMID17360441
PMCPMC1820672

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.