Evidence map›Paper›PMID 17360351›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Key feature of the catalytic cycle of TNF-alpha converting enzyme involves communication between distal protein sites and the enzyme catalytic core.

Ariel Solomon, Barak Akabayov, Anatoly Frenkel, Marcos E Milla, Irit Sagi

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Enzymatic turnover of macromolecules generates long-lasting protein-water-coupled motions beyond reaction steady state.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  6. Article
  7. Regulated ADAM17-dependent EGF family ligand release by substrate-selecting signaling pathways.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  8. Article
  9. Article
  10. Cross-domain inhibition of TACE ectodomain.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  11. Fell-Muir Lecture: Metalloproteinases: from demolition squad to master regulators.International journal of experimental pathology · 2010
    Article
  12. ADAM-17: the enzyme that does it all.Critical reviews in biochemistry and molecular biology · 2010
    Review
  13. Time-resolved structural studies of protein reaction dynamics: a smorgasbord of X-ray approaches.Acta crystallographica. Section A, Foundations of crystallography · 2010
    Article
  14. Active site dynamics in the zinc-dependent medium chain alcohol dehydrogenase superfamily.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  15. The ADAM metalloproteinases.Molecular aspects of medicine · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ariel SolomonDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.
Barak Akabayov
Anatoly Frenkel
Marcos E Milla
Irit Sagi
Weizmann Institute of Science · ILYeshiva University · US

Funding

NIAMS NIH HHS AR45-4
6 · The paper itself

Abstract

Despite their key roles in many normal and pathological processes, the molecular details by which zinc-dependent proteases hydrolyze their physiological substrates remain elusive. Advanced theoretical analyses have suggested reaction models for which there is limited and controversial experimental evidence. Here we report the structure, chemistry and lifetime of transient metal-protein reaction intermediates evolving during the substrate turnover reaction of a metalloproteinase, the tumor necrosis factor-alpha converting enzyme (TACE). TACE controls multiple signal transduction pathways through the proteolytic release of the extracellular domain of a host of membrane-bound factors and receptors. Using stopped-flow x-ray spectroscopy methods together with transient kinetic analyses, we demonstrate that TACE's catalytic zinc ion undergoes dynamic charge transitions before substrate binding to the metal ion. This indicates previously undescribed communication pathways taking place between distal protein sites and the enzyme catalytic core. The observed charge transitions are synchronized with distinct phases in the reaction kinetics and changes in metal coordination chemistry mediated by the binding of the peptide substrate to the catalytic metal ion and product release. Here we report key local charge transitions critical for proteolysis as well as long sought evidence for the proposed reaction model of peptide hydrolysis. This study provides a general approach for gaining critical insights into the molecular basis of substrate recognition and turnover by zinc metalloproteinases that may be used for drug design.

Indexed as

Catalytic DomainADAM17 ProteinADAM ProteinsAmino AcidsBinding SitesCatalysisDrug DesignHumansHydrolysisKineticsLigandsModels, MolecularNonlinear DynamicsPeptide HydrolasesPeptidesSubstrate SpecificityADAM17 ProteinADAM17 protein, humanADAM ProteinsAmino AcidsLigandsPeptide HydrolasesPeptidesZinc

Identifiers

PMID17360351
PMCPMC1829242
OpenAlexW2029766493

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.