Evidence map›Paper›PMID 17357085›Full record

ArticleAmerican journal of human genetics2007

Transcription factor SIX5 is mutated in patients with branchio-oto-renal syndrome.

Bethan E Hoskins, Carl H Cramer, Derek Silvius, Dan Zou, Richard M Raymond, Dana J Orten, William J Kimberling, Richard J H Smith, Dominique Weil, Christine Petit and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 200 citations in OpenAlex.

  1. Article
  2. Article
  3. Branchio-oto-renal syndrome: a narrative review.Childhood kidney diseases · 2026
    Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Case report of a novelJournal of otology · 2025
    Article
  10. Review
  11. Review
  12. NAR genomics and bioinformatics · 2024
    Article
  13. Article
  14. Review
  15. Using Xenopus to discover new candidate genes involved in BOR and other congenital hearing loss syndromes.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2024
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Bethan E HoskinsDepartment of Pediatrics and of Human Genetics, University of Michigan, Ann Arbor, MI, USA.
Carl H Cramer
Derek Silvius
Dan Zou
Richard M Raymond
Dana J Orten
William J Kimberling
Richard J H Smith
Dominique Weil
Christine Petit
Edgar A Otto
Pin-Xian Xu
Friedhelm Hildebrandt
University of Michigan · USMcLaughlin Research Institute · USInserm · FRBoys Town · USBoys Town National Research Hospital · USUniversity of Iowa · US

Funding

Transcription factors in kidney developmentR01DK064640 · NIDDK · MC LAUGHLIN RESEARCH INSTITUTE · PI PIN-XIAN XU · 2003 to 2026
$8.9M
The Role of Eya and its Interacting Gene Six in Mammalian Inner Ear DevelopmentR01DC005824 · NIDCD · MC LAUGHLIN RESEARCH INSTITUTE · PI XU, PIN-XIAN · 2002 to 2011
$4.1M
NIDCD NIH HHS R01 DC005824NIDDK NIH HHS DK064640NIDDK NIH HHS R01-DK045345-01NIDDK NIH HHS R01 DK064640NIDDK NIH HHS T32DK0655517-01
6 · The paper itself

Abstract

Branchio-oto-renal syndrome (BOR) is an autosomal dominant developmental disorder characterized by the association of branchial arch defects, hearing loss, and renal anomalies. Mutations in EYA1 are known to cause BOR. More recently, mutations in SIX1, which interacts with EYA1, were identified as an additional cause of BOR. A second member of the SIX family of proteins, unc-39 (SIX5), has also been reported to directly interact with eya-1 in Caenorhabditis elegans. We hypothesized that this interaction would be conserved in humans and that interactors of EYA1 represent good candidate genes for BOR. We therefore screened a cohort of 95 patients with BOR for mutations in SIX5. Four different heterozygous missense mutations were identified in five individuals. Functional analyses of these mutations demonstrated that two mutations affect EYA1-SIX5 binding and the ability of SIX5 or the EYA1-SIX5 complex to activate gene transcription. We thereby identified heterozygous mutations in SIX5 as a novel cause of BOR.

Indexed as

Genetic Predisposition to DiseaseBase SequenceBranchio-Oto-Renal SyndromeGenetic TestingHomeodomain ProteinsHumansIntracellular Signaling Peptides and ProteinsLuciferasesMolecular Sequence DataMutation, MissenseNuclear ProteinsProtein Tyrosine PhosphatasesTranscription FactorsEYA1 protein, humanHomeodomain ProteinsIntracellular Signaling Peptides and ProteinsLuciferasesNuclear ProteinsProtein Tyrosine PhosphatasesSIX5 protein, humanTranscription Factors

Identifiers

PMID17357085
PMCPMC1852719
OpenAlexW2001175271

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.