Evidence map›Paper›PMID 17357077›Full record

ArticleAmerican journal of human genetics2007

Admixture mapping of an allele affecting interleukin 6 soluble receptor and interleukin 6 levels.

David Reich, Nick Patterson, Vijaya Ramesh, Philip L De Jager, Gavin J McDonald, Arti Tandon, Edwin Choy, Donglei Hu, Bani Tamraz, Ludmila Pawlikowska and 14 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in American journal of human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed, 2 pooled it
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 2 syntheses or guidelines pooled it, 168 citations in OpenAlex.

  1. Pooled it
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  5. Observational
  6. Review
  7. Article
  8. Article
  9. The effect of interleukin-6 signaling on severe malaria: A Mendelian randomization analysis.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2023
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  12. Role ofPharmaceutics · 2022
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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 10 institutions in 2 countries.

David ReichDepartment of Genetics, Harvard Medical School, New Research Building, Boston, MA 02115, USA. reich@genetics.med.harvard.edu
Nick Patterson
Vijaya Ramesh
Philip L De Jager
Gavin J McDonald
Arti Tandon
Edwin Choy
Donglei Hu
Bani Tamraz
Ludmila Pawlikowska
Christina Wassel-Fyr
Scott Huntsman
Alicja Waliszewska
Elizabeth Rossin
Rongling Li
Melissa Garcia
Alexander Reiner
Robert Ferrell
Steve Cummings
Pui-Yan Kwok
Tamara Harris
Joseph M Zmuda
Elad Ziv
Health, Aging and Body Composition (Health ABC) Study
University of California, San Francisco · USBroad Institute · USInstitute of Aging · CAUniversity of Pittsburgh · USCenter for Human Genetics · USHarvard University · USMassachusetts General Hospital · USUCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of Tennessee Health Science Center · USUniversity of Washington · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
Interdepartmental Neuroscience CenterP30NS045776 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI BREAKEFIELD, XANDRA OWENS, TANNOUS, BAKHOS A · 2003 to 2018
$11.1M
Genetic Epidemiology of Musculoskeletal AgingR01AG021024 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FERRELL, ROBERT EDWARD · 2002 to 2006
$3.3M
DYNAMICS OF HEALTH .AGING . AND BODY COMPOSITION /Pittsburgh/-260962101N01AG062101 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · 1996 to 2004
$996k
DYNAMICS OF HEALTH . AGING . AND BODY COMPOSITION /Memphis/-26062103N01AG062103 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · 1996 to 2004
$793k
Health, Aging and Body Composition StudyZ01AG007390 · NIA · NATIONAL INSTITUTE ON AGING · PI HARRIS, TAMARA B. · 2006 to 2008
$738k
Breast Cancer, Breast Density &Admixture Among LatinasK22CA109351 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZIV, ELAD · 2004 to 2006
$448k
HEALTH ABC--COORDINATING UNIT /California/-260062106N01AG062106 · NIA · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · 1996 to 2004
$109k
NCI NIH HHS K22 CA109351NCRR NIH HHS U54 RR020278NIA NIH HHS N01 AG062101NIA NIH HHS N01 AG062103NIA NIH HHS N01 AG062106NIA NIH HHS R01 AG021024NIGMS NIH HHS T32 GM007753NINDS NIH HHS P30 NS045776
6 · The paper itself

Abstract

Circulating levels of inflammatory markers can predict cardiovascular disease risk. To identify genes influencing the levels of these markers, we genotyped 1,343 single-nucleotide polymorphisms (SNPs) in 1,184 African Americans from the Health, Aging and Body Composition (Health ABC) Study. Using admixture mapping, we found a significant association of interleukin 6 soluble receptor (IL-6 SR) with European ancestry on chromosome 1 (LOD 4.59), in a region that includes the gene for this receptor (IL-6R). Genotyping 19 SNPs showed that the effect is largely explained by an allele at 4% frequency in West Africans and at 35% frequency in European Americans, first described as associated with IL-6 SR in a Japanese cohort. We replicate this association (P<<1.0x10-12) and also demonstrate a new association with circulating levels of a different molecule, IL-6 (P<3.4x10-5). After replication in 1,674 European Americans from Health ABC, the combined result is even more significant: P<<1.0x10-12 for IL-6 SR, and P<2.0x10-9 for IL-6. These results also serve as an important proof of principle, showing that admixture mapping can not only coarsely localize but can also fine map a phenotypically important variant.

Indexed as

SoftwareAgedBlack or African AmericanChromosome MappingChromosomes, Human, Pair 1FemaleGene FrequencyGenomicsGenotypeHumansInterleukin-6Lod ScoreMalePolymorphism, Single NucleotideReceptors, Interleukin-6White PeopleInterleukin-6Receptors, Interleukin-6

Identifiers

PMID17357077
PMCPMC1852718
OpenAlexW1993255002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.