Evidence map›Paper›PMID 17355226›Full record

ArticleThe Biochemical journal2007

The molecular structure of human tissue type XV presents a unique conformation among the collagens.

Jeanne C Myers, Peter S Amenta, Arnold S Dion, Justin P Sciancalepore, Chandrasekaran Nagaswami, John W Weisel, Peter D Yurchenco

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
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  5. Article
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  7. Review
  8. Collagen- and hyaluronic acid-based hydrogels and their biomedical applications.Materials science & engineering. R, Reports : a review journal · 2021
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. The collagen family.Cold Spring Harbor perspectives in biology · 2011
    Review
  19. Article
  20. Prostaglandin E2 and prostaglandin F2α differentially modulate matrix metabolism of human nucleus pulposus cells.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2010
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jeanne C MyersDepartment of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA. myers@mail.med.upenn.edu
Peter S Amenta
Arnold S Dion
Justin P Sciancalepore
Chandrasekaran Nagaswami
John W Weisel
Peter D Yurchenco
University of Pennsylvania · US

Funding

STRUCTURAL STUDIES OF BLOOD CLOTTING PROTEINSR01HL030954 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI WEISEL, JOHN W · 1985 to 2008
$3.0M
Basement Membrane Self-assembly and StructureR37DK036425 · NIDDK · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI YURCHENCO, PETER DANA · 2003 to 2012
$2.9M
MOLECULAR CHARACTERIZATION OF TYPE XIX COLLAGENR01GM064777 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MYERS, JEANNE C · 2002 to 2005
$1.1M
TYPE III GENE EXPRESSION IN CARTILAGEP01AR020553 · NIAMS · UNIVERSITY CITY SCIENCE CENTER · PI KEFALIDES, NICHOLAS A · 1986 to 1996
–
NHLBI NIH HHS HL30954NHLBI NIH HHS R01 HL030954NIAMS NIH HHS AR20553NIDDK NIH HHS R37 DK036425NIDDK NIH HHS R37-DK36425NIGMS NIH HHS GM64777NIGMS NIH HHS R01 GM064777
6 · The paper itself

Abstract

Establishing the structure of the non-fibrillar collagens has provided a unique perspective to understanding their specialized functions in the extracellular matrix. These proteins exhibit very diverse conformations and supramolecular assemblies. Type XV collagen is a large macromolecule distinguished by a highly interrupted collagenous domain and many utilized sites of attachment for CS (chondroitin sulfate) and HS (heparan sulfate) glycosaminoglycan chains. It is present in most basement membrane zones of human tissues, where it is found closely associated with large collagen fibrils. To determine the molecular shape and organization of type XV, the protein was purified from human umbilical cords by salt extraction, and by ion-exchange and antibody-affinity chromatography. The representation of type XV in one of its most abundant tissue sources is estimated at only (1-2)x10(-4)% of dry weight. The molecules examined by transmission electron microscopy after rotary shadowing were visualized in multiple forms. Relatively few type XV monomers appeared elongated and kinked; most molecules were found in a knot/figure-of-eight/pretzel configuration not previously described for a collagen. Collective measurements of these populations revealed an average length of 193+/-16 nm. At the N-terminal end, identified by C-terminal antibody binding, were three 7.7 nm-diameter spheres, corresponding to TSPN-1 (N-terminal module of thrombospondin-1) modules, and attached to the collagen backbone by a short linker. The type XV monomers show the ability to self-assemble into higher-order structures. Some were arranged in complex clusters, but simpler oligomers, which may represent intermediates, were observed in a cruciform pattern with intermolecular binding sites that probably originate in the interruption sequences. The morphology of type XV is thus the antithesis of the fibrillar collagens, and the shape attains the required flexibility to form the spectrum of interconnecting links between banded fibrils at the basement membrane/interstitial border. These type XV structures may act as a biological 'spring' to stabilize and enhance resilience to compressive and expansive forces, and the multimers, in particular, with selective complements of many localized CS and HS chains, may be instrumental in spatial and temporal recruitment of modulators in growth, development and pathological processes.

Indexed as

Protein ConformationCollagenCysteineHumansMicroscopy, Electron, TransmissionProtein Structure, TertiaryUmbilical CordCOL15A1 protein, humanCollagenCysteine

Identifiers

PMID17355226
PMCPMC1896284
OpenAlexW2085094015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.