Evidence map›Paper›PMID 17353367›Full record

ArticleThe Journal of experimental medicine2007

Aberrant immunoglobulin class switch recombination and switch translocations in activated B cell-like diffuse large B cell lymphoma.

Georg Lenz, Inga Nagel, Reiner Siebert, Anna V Roschke, Warren Sanger, George W Wright, Sandeep S Dave, Bruce Tan, Hong Zhao, Andreas Rosenwald and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 191 citations in OpenAlex.

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  15. Expression and Clinical Significance of Spi-B in B-cell Acute Lymphoblastic Leukemia.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2022
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43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 4 countries.

Georg LenzMetabolism Branch, Division of Cancer Treatment and Diagnosis, National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Inga Nagel
Reiner Siebert
Anna V Roschke
Warren Sanger
George W Wright
Sandeep S Dave
Bruce Tan
Hong Zhao
Andreas Rosenwald
Hans Konrad Muller-Hermelink
Randy D Gascoyne
Elias Campo
Elaine S Jaffe
Erlend B Smeland
Richard I Fisher
W Michael Kuehl
Wing C Chan
Louis M Staudt
Center for Cancer Research · USUniversity Hospital Schleswig-Holstein · DEUniversity of Nebraska Medical Center · USUniversity of Würzburg · DEBC Cancer Agency · CANational Institutes of Health · USSWOG Cancer Research Network · USUniversitat de Barcelona · ES

Funding

Molecular Signatures to Improve Diagnosis and Outcome PrU01CA114778 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI CHAN, WING C. · 2005 to 2009
$8.7M
REGULATION OF GENE EXPRESSION IN NORMAL AND MALIGNANT HUMAN LYMPHOCYTESZ01SC004024 · SC · CLINICAL SCIENCES · PI STAUDT, LOUIS · 1996 to 2007
$4.4M
MOLECULAR CLASSIFICATION OF B-CELL LYMPHOMAU01CA084967 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI CHAN, WING C. · 1999 to 2004
$4.1M
MOLECULAR PATHOGENESIS OF MULTIPLE MYELOMAZ01SC006581 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI KUEHL, WALTER MICHAEL · 1996 to 2008
$2.7M
Lymphoma Disease Discovery and DefintionZ01SC000550 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI JAFFE, ELAINE · 1996 to 2008
$2.3M
NCI NIH HHS U01 CA084967NCI NIH HHS U01 CA114778NCI NIH HHS U01-CA84967
6 · The paper itself

Abstract

To elucidate the mechanisms underlying chromosomal translocations in diffuse large B cell lymphoma (DLBCL), we investigated the nature and extent of immunoglobulin class switch recombination (CSR) in these tumors. We used Southern blotting to detect legitimate and illegitimate CSR events in tumor samples of the activated B cell-like (ABC), germinal center B cell-like (GCB), and primary mediastinal B cell lymphoma (PMBL) subgroups of DLBCL. The frequency of legitimate CSR was lower in ABC DLBCL than in GCB DLBCL and PMBL. In contrast, ABC DLBCL had a higher frequency of internal deletions within the switch mu (Smu) region compared with GCB DLBCL and PMBL. ABC DLBCLs also had frequent deletions within Sgamma and other illegitimate switch recombinations. Sequence analysis revealed ongoing Smu deletions within ABC DLBCL tumor clones, which were accompanied by ongoing duplications and activation-induced cytidine deaminase-dependent somatic mutations. Unexpectedly, short fragments derived from multiple chromosomes were interspersed within Smu in one case. These findings suggest that ABC DLBCLs have abnormalities in the regulation of CSR that could predispose to chromosomal translocations. Accordingly, aberrant switch recombination was responsible for translocations in ABC DLBCLs involving BCL6, MYC, and a novel translocation partner, SPIB.

Indexed as

Recombination, GeneticTranslocation, GeneticCell Line, TumorHumansImmunoglobulin Class SwitchingLymphocyte ActivationLymphoma, B-CellLymphoma, B-Cell, Marginal ZoneLymphoma, Large B-Cell, DiffuseTumor Cells, Cultured

Identifiers

PMID17353367
PMCPMC2137913
OpenAlexW2144451670

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.