Evidence map›Paper›PMID 17352822›Full record

ArticleMolecular cancer2007

Identification of a human TFPI-2 splice variant that is upregulated in human tumor tissues.

Prakasha Kempaiah, Hitendra S Chand, Walter Kisiel

Open access · goldAbstract read
In one paragraph

Article in Molecular cancer, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Prakasha KempaiahDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, NM, USA. pkempaiah@salud.unm.edu
Hitendra S Chand
Walter Kisiel
University of New Mexico · US

Funding

TYPE-2 TISSUE FACTOR PATHWAY INHIBITORR01HL064119 · NHLBI · UNIVERSITY OF NEW MEXICO · PI KISIEL, WALTER · 2000 to 2008
$2.6M
NHLBI NIH HHS HL64119NHLBI NIH HHS R01 HL064119
6 · The paper itself

Abstract

backgroundPrevious studies have shown that the expression of tissue factor pathway inhibitor-2 (TFPI-2), a matrix-associated Kunitz-type serine proteinase inhibitor, is markedly down-regulated in several tumor cells through hypermethylation of the TFPI-2 gene promoter. In the present study, RT-PCR analysis of total RNA from both human normal and tumor cells revealed a novel 289 nucleotide splice variant of the TFPI-2 transcript designated as aberrantly-spliced TFPI-2 (asTFPI-2).

resultsNucleotide sequence analyses indicated that asTFPI-2 consists of complete exons II and V, fused with several nucleotides derived from exons III and IV, as well as six nucleotides derived from intron C. 5'- and 3'-RACE analyses of total RNA amplified exclusively the wild-type TFPI-2 transcript, indicating that asTFPI-2 lacks either a 5'-untranslated region (UTR) or a 3'-poly (A)+ tail. Quantitative real-time RT-PCR analyses revealed that several human tumor cells contain 4 to 50-fold more copies of asTFPI-2 in comparison to normal cells. In spite of the absence of a 5'-UTR or poly (A)+ tail, the asTFPI-2 variant exhibited a half-life of ~16 h in tumor cells.

conclusionOur studies reveal the existence of a novel, aberrantly-spliced TFPI-2 transcript predominantly expressed in tumor cells and provides suggestive evidence for an additional mechanism for tumor cells to down-regulate TFPI-2 protein expression enhancing their ability to degrade the extracellular matrix.

Indexed as

RNA Splicing5' Untranslated RegionsCell Line, TumorDactinomycinExonsGlycoproteinsHalf-LifeHumansIntronsNeoplasm ProteinsNeoplasmsNucleic Acid Synthesis InhibitorsOrgan SpecificityPoly AReverse Transcriptase Polymerase Chain ReactionRNA, Messenger5' Untranslated RegionsDactinomycinGlycoproteinsNeoplasm ProteinsNucleic Acid Synthesis InhibitorsPoly ARNA, MessengerRNA, Neoplasmtissue-factor-pathway inhibitor 2

Identifiers

PMID17352822
PMCPMC1828166
OpenAlexW2099226742

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.