ArticleArchaea (Vancouver, B.C.)2007
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C.
Article in Archaea (Vancouver, B.C.), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
25 citing papers in PubMed, 43 citations in OpenAlex.
- Article
- The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism.Microbiology and molecular biology reviews : MMBR · 2019Review
- Molecular Docking Evaluation of (Molecules (Basel, Switzerland) · 2018Article
- Microbial solvent formation revisited by comparative genome analysis.Biotechnology for biofuels · 2017Article
- The draft genome of the hyperthermophilic archaeonStandards in genomic sciences · 2017Article
- Comparative Genomics ofFrontiers in microbiology · 2017Article
- Pyrodictium delaneyi sp. nov., a hyperthermophilic autotrophic archaeon that reduces Fe(III) oxide and nitrate.International journal of systematic and evolutionary microbiology · 2016Article
- Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.Extremophiles : life under extreme conditions · 2014Article
- Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities.Applied and environmental microbiology · 2014Article
- Variation of the virus-related elements within syntenic genomes of the hyperthermophilic Archaeon Aeropyrum.Applied and environmental microbiology · 2013Article
- Broad nucleotide cofactor specificity of DNA ligase from the hyperthermophilic crenarchaeon Hyperthermus butylicus and its evolutionary significance.Extremophiles : life under extreme conditions · 2013Article
- Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2.Nucleic acids research · 2013Article
- Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus.Nucleic acids research · 2012Article
- Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A).Standards in genomic sciences · 2011Article
- Complete genome sequence of Desulfurococcus mucosus type strain (O7/1).Standards in genomic sciences · 2011Article
- Crenarchaeal CdvA forms double-helical filaments containing DNA and interacts with ESCRT-III-like CdvB.PloS one · 2011Article
- Complete genome sequence of Vulcanisaeta distributa type strain (IC-017).Standards in genomic sciences · 2010Article
- Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1).Standards in genomic sciences · 2010Article
- Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.PloS one · 2010Article
- Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene.BMC evolutionary biology · 2009Article
Corrections and comments
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Authors and funding
10 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Hyperthermus butylicus, a hyperthermophilic neutrophile and anaerobe, is a member of the archaeal kingdom Crenarchaeota. Its genome consists of a single circular chromosome of 1,667,163 bp with a 53.7% G+C content. A total of 1672 genes were annotated, of which 1602 are protein-coding, and up to a third are specific to H. butylicus. In contrast to some other crenarchaeal genomes, a high level of GUG and UUG start codons are predicted. Two cdc6 genes are present, but neither could be linked unambiguously to an origin of replication. Many of the predicted metabolic gene products are associated with the fermentation of peptide mixtures including several peptidases with diverse specificities, and there are many encoded transporters. Most of the sulfur-reducing enzymes, hydrogenases and electron-transfer proteins were identified which are associated with energy production by reducing sulfur to H(2)S. Two large clusters of regularly interspaced repeats (CRISPRs) are present, one of which is associated with a crenarchaeal-type cas gene superoperon; none of the spacer sequences yielded good sequence matches with known archaeal chromosomal elements. The genome carries no detectable transposable or integrated elements, no inteins, and introns are exclusive to tRNA genes. This suggests that the genome structure is quite stable, possibly reflecting a constant, and relatively uncompetitive, natural environment.
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