Evidence map›Paper›PMID 17350051›Full record

ArticleMarine pollution bulletin2007

Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand.

Iliana B Baums, Kelly D Goodwin, Traci Kiesling, David Wanless, Mara R Diaz, Jack W Fell

Abstract read
In one paragraph

Article in Marine pollution bulletin, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Enterococci in the environment.Microbiology and molecular biology reviews : MMBR · 2012
    Review
  6. Article
  7. Article
  8. Multiplex reverse transcription PCR Luminex assay for detection and quantitation of viral agents of gastroenteritis.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2011
    Article
  9. Article
  10. Pepper mild mottle virus as an indicator of fecal pollution.Applied and environmental microbiology · 2009
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Gut microbes
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Iliana B BaumsCooperative Institute for Marine and Atmospheric Studies, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, FL 33149, USA.
Kelly D Goodwin
Traci Kiesling
David Wanless
Mara R Diaz
Jack W Fell

Funding

Toxic Harmful Algal Blooms (HABs)P50ES012736 · NIEHS · UNIVERSITY OF MIAMI ROSENTEIL SCHOOL · PI FLEMING, LORA ELDERKIN · 2004 to 2010
$2.7M
NIEHS NIH HHS P50 ES012736NIEHS NIH HHS P50 ES12736
6 · The paper itself

Abstract

Research to understand and remediate coastal pollution is moving toward a multitiered approach in which traditional enumeration of fecal indicators is accompanied by molecular analysis of a variety of targets. Technology that rapidly detects multiple microbial contaminants would benefit from such an approach. The Luminex 100 system is a suspension array that assays multiple analytes rapidly in a single well of a microtiter plate. The ability of the system to simultaneously detect multiple fecal indicating bacteria in environmental samples was tested. Primer/probe sets were designed to simultaneously detect the following fecal indicators: the Bacteroides fragilis group, Enterococcus spp., Escherichia coli and Shigella spp., Bacteroides distasonis, and Ent. faecalis. Specificity and sensitivity of the Luminex probes was tested against laboratory cultures. In addition, sequencing, culture plate testing, and specificity testing with environmental isolates were steps taken to validate the function of the assay with environmental samples. Luminex response to cultures and to environmental samples was consistent with sequencing results, suggesting that the technology has the potential to simultaneously detect multiple targets for coastal water quality applications, particularly as progress is made to efficiently extract DNA from water and sediment matrices.

Indexed as

Fluorescent DyesBacteriaBase SequenceCluster AnalysisDNA PrimersDNA ProbesEnvironmental MonitoringFecesMicrospheresMolecular Sequence DataPhylogenyPolymerase Chain ReactionRiversRNA, Ribosomal, 16SSeawaterSensitivity and SpecificityDNA PrimersDNA ProbesFluorescent DyesRNA, Ribosomal, 16SSilicon Dioxide

Identifiers

PMID17350051
PMCPMC1950674

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.