ReviewMicrobial ecology2007
Genotypic microbial community profiling: a critical technical review.
Review in Microbial ecology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
88 citing papers in PubMed.
- Environmental and agronomic drivers of bacterial and fungal alpha diversity in crop rhizosphere: a multifactorial field study.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026Article
- Commercial washing and storage over shelf life impact bacterial communities more than the fungal communities on baby spinach.Microbiology spectrum · 2026Article
- Mobile genetic elements shape microbial diversity and functions in thawing permafrost soils.Nature microbiology · 2026Article
- Elevation shapes the seed endophytic bacteria richness and composition ofAIMS microbiology · 2026Article
- Bacterial profile-based body fluid identification using a machine learning approach.Genes & genomics · 2025Article
- Proof of Concept Study: Comparability of Microbiome Diversity in Self- and Physician-Collected HPV-Positive and HPV-Negative Cervicovaginal Samples.International journal of molecular sciences · 2024Article
- The microbiome analysis of ripen grape berries supports the complex etiology of sour rot.Frontiers in microbiology · 2024Article
- Composition and Distribution Characteristics of Rhizosphere Bacterial Community of Ammodendron bifolium Growing in Takeermohuer Desert Are Different from Those in Non-rhizosphere.Microbial ecology · 2023Article
- A comprehensive review of microbial contamination in the indoor environment: sources, sampling, health risks, and mitigation strategies.Frontiers in public health · 2023Review
- Taxonomy Informed Clustering, an Optimized Method for Purer and More Informative Clusters in Diversity Analysis and Microbiome Profiling.Frontiers in bioinformatics · 2022Article
- Analysis methods for the gut microbiome in neuropsychiatric and neurodegenerative disorders.Computational and structural biotechnology journal · 2022Review
- Molecular Phylogeny of Endophytic Fungi from Rattan (Journal of fungi (Basel, Switzerland) · 2021Article
- Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China.BMC microbiology · 2021Article
- Intestinal microbiota: The hidden gems in the gut?Asian Pacific journal of allergy and immunology · 2020Review
- Food policy, nutrition and nutraceuticals in the prevention and management of COVID-19: Advice for healthcare professionals.Trends in food science & technology · 2020Review
- Diversity within species: interpreting strains in microbiomes.Nature reviews. Microbiology · 2020Review
- The sources and transmission routes of microbial populations throughout a meat processing facility.NPJ biofilms and microbiomes · 2020Article
- The Biomolecular Spectrum Drives Microbial Biology and Functions in Agri-Food-Environments.Biomolecules · 2020Article
- Sub-Lethal Effects of Pesticides on the DNA of Soil Organisms as Early Ecotoxicological Biomarkers.Frontiers in microbiology · 2020Review
- Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production.Frontiers in microbiology · 2020Article
28 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Microbial ecology has undergone a profound change in the last two decades with regard to methods employed for the analysis of natural communities. Emphasis has shifted from culturing to the analysis of signature molecules including molecular DNA-based approaches that rely either on direct cloning and sequencing of DNA fragments (shotgun cloning) or often rely on prior amplification of target sequences by use of the polymerase chain reaction (PCR). The pool of PCR products can again be either cloned and sequenced or can be subjected to an increasing variety of genetic profiling methods, including amplified ribosomal DNA restriction analysis, automated ribosomal intergenic spacer analysis, terminal restriction fragment length polymorphism, denaturing gradient gel electrophoresis, temperature gradient gel electrophoresis, single strand conformation polymorphism, and denaturing high-performance liquid chromatography. In this document, we present and critically compare these methods commonly used for the study of microbial diversity.
Indexed as
Identifiers
17345133What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.