Evidence map›Paper›PMID 17344846›Full record

ArticleNature2007

Patterns of somatic mutation in human cancer genomes.

Christopher Greenman, Philip Stephens, Raffaella Smith, Gillian L Dalgliesh, Christopher Hunter, Graham Bignell, Helen Davies, Jon Teague, Adam Butler, Claire Stevens and 56 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Nature, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02414477 (Metabolism of Deuterated NNN in Smokeless Tobacco Users), which is not on this map. Cited by 1,543 papers.

0numbers the graph read from it
0cells of the map it votes in
1,543citing papers in PubMed
94.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02414477 phase1terminatednot on this mapstarted 2018, after this paper: background citation

Metabolism of Deuterated NNN in Smokeless Tobacco Users

TypeinterventionalSponsorUniversity of MinnesotaRan2018 to 2020Enrolled13ConditionsTobacco Toxicant ExposureArmsDeuterated NNN
3 · Its place in the literature

Who cites it

1,543 citing papers in PubMed, 3,129 citations in OpenAlex.

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  16. A Darwinian Perspective on Tumor Evolution.International journal of biological sciences · 2026
    Review
  17. Review
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1,483 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

66 authors at 17 institutions in 7 countries.

Christopher GreenmanCancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Philip Stephens
Raffaella Smith
Gillian L Dalgliesh
Christopher Hunter
Graham Bignell
Helen Davies
Jon Teague
Adam Butler
Claire Stevens
Sarah Edkins
Sarah O'Meara
Imre Vastrik
Esther E Schmidt
Tim Avis
Syd Barthorpe
Gurpreet Bhamra
Gemma Buck
Bhudipa Choudhury
Jody Clements
Jennifer Cole
Ed Dicks
Simon Forbes
Kris Gray
Kelly Halliday
Rachel Harrison
Katy Hills
Jon Hinton
Andy Jenkinson
David Jones
Andy Menzies
Tatiana Mironenko
Janet Perry
Keiran Raine
Dave Richardson
Rebecca Shepherd
Alexandra Small
Calli Tofts
Jennifer Varian
Tony Webb
Sofie West
Sara Widaa
Andy Yates
Daniel P Cahill
David N Louis
Peter Goldstraw
Andrew G Nicholson
Francis Brasseur
Leendert Looijenga
Barbara L Weber
Yoke-Eng Chiew
Anna DeFazio
Mel F Greaves
Anthony R Green
Peter Campbell
Ewan Birney
Douglas F Easton
Georgia Chenevix-Trench
Min-Han Tan
Sok Kean Khoo
Bin Tean Teh
Siu Tsan Yuen
Suet Yi Leung
Richard Wooster
P Andrew Futreal
Michael R Stratton
Wellcome Sanger Institute · GBVan Andel Institute · USEuropean Bioinformatics Institute · GBInstitute of Cancer Research · GBRoyal Brompton Hospital · GBUniversity of Cambridge · GBCenter for Cancer Research · USErasmus MC Cancer Institute · NLHarvard University · USLudwig Cancer Research · BEQIMR Berghofer Medical Research Institute · AUQueen Mary Hospital · CNThe University of Sydney · AUUniversity of Hong Kong · HKUniversity of Pennsylvania · USWellcome Trust · GBWestmead Hospital · AU

Funding

Wellcome Trust 077012Wellcome Trust 088340
6 · The paper itself

Abstract

Cancers arise owing to mutations in a subset of genes that confer growth advantage. The availability of the human genome sequence led us to propose that systematic resequencing of cancer genomes for mutations would lead to the discovery of many additional cancer genes. Here we report more than 1,000 somatic mutations found in 274 megabases (Mb) of DNA corresponding to the coding exons of 518 protein kinase genes in 210 diverse human cancers. There was substantial variation in the number and pattern of mutations in individual cancers reflecting different exposures, DNA repair defects and cellular origins. Most somatic mutations are likely to be 'passengers' that do not contribute to oncogenesis. However, there was evidence for 'driver' mutations contributing to the development of the cancers studied in approximately 120 genes. Systematic sequencing of cancer genomes therefore reveals the evolutionary diversity of cancers and implicates a larger repertoire of cancer genes than previously anticipated.

Indexed as

GenomicsAmino Acid SequenceDNA Mutational AnalysisGenes, NeoplasmGenome, HumanHumansMolecular Sequence DataMutationNeoplasm ProteinsNeoplasmsProtein KinasesNeoplasm ProteinsProtein Kinases

Identifiers

PMID17344846
PMCPMC2712719
OpenAlexW2023568503

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.