Evidence map›Paper›PMID 17341462›Full record

ArticleNucleic acids research2007

Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription.

Matjaz Barboric, Jasper H N Yik, Nadine Czudnochowski, Zhiyuan Yang, Ruichuan Chen, Xavier Contreras, Matthias Geyer, B Matija Peterlin, Qiang Zhou

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 1 synthesis or guideline pooled it, 183 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Structural basis for P-TEFb association with BRD4.bioRxiv : the preprint server for biology · 2026
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74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Matjaz BarboricDepartment of Medicine, Rosalind Russell Medical Research Center, University of California at San Francisco, San Francisco, CA 94143-0703, USA.
Jasper H N Yik
Nadine Czudnochowski
Zhiyuan Yang
Ruichuan Chen
Xavier Contreras
Matthias Geyer
B Matija Peterlin
Qiang Zhou
University of California, Berkeley · USXiamen University · CNMax Planck Society · DEUniversity of California, San Francisco · US

Funding

Roles of N-TEF and P-TEBb in HIV LatencyP01AI058708 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2004 to 2009
$11.6M
REGULATION OF TRANSCRIPTIONAL ELONGATION BY HIV1 TATR01AI041757 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHOU, QIANG · 1997 to 2019
$6.6M
Transcriptional regulation by protein kinase CDC2L5F32AI058400 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI YIK, JASPER · 2004 to 2006
$142k
NIAID NIH HHS AI058400NIAID NIH HHS AI058708NIAID NIH HHS AI41757NIAID NIH HHS F32 AI058400NIAID NIH HHS P01 AI058708NIAID NIH HHS R01 AI041757
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) transcriptional transactivator (Tat) recruits the positive transcription elongation factor b (P-TEFb) to the viral promoter. Consisting of cyclin dependent kinase 9 (Cdk9) and cyclin T1, P-TEFb phosphorylates RNA polymerase II and the negative transcription elongation factor to stimulate the elongation of HIV-1 genes. A major fraction of nuclear P-TEFb is sequestered into a transcriptionally inactive 7SK small nuclear ribonucleoprotein (snRNP) by the coordinated actions of the 7SK small nuclear RNA (snRNA) and hexamethylene bisacetamide (HMBA) induced protein 1 (HEXIM1). In this study, we demonstrate that Tat prevents the formation of and also releases P-TEFb from the 7SK snRNP in vitro and in vivo. This ability of Tat depends on the integrity of its N-terminal activation domain and stems from the high affinity interaction between Tat and cyclin T1, which allows Tat to directly displace HEXIM1 from cyclin T1. Furthermore, we find that in contrast to the Tat-independent activation of the HIV-1 promoter, Tat-dependent HIV-1 transcription is largely insensitive to the inhibition by HEXIM1. Finally, primary blood lymphocytes display a reduced amount of the endogenous 7SK snRNP upon HIV-1 infection. All these data are consistent with the model that Tat not only recruits but also increases the active pool of P-TEFb for efficient HIV-1 transcription.

Indexed as

Gene Expression Regulation, ViralBinding, CompetitiveCyclinsCyclin TGene Products, tatHeLa CellsHIV-1HumansLymphocytesPositive Transcriptional Elongation Factor BRibonucleoproteins, Small NuclearRNA-Binding Proteinstat Gene Products, Human Immunodeficiency VirusTranscription FactorsTranscription, GeneticCCNT1 protein, humanCyclinsCyclin TGene Products, tatHEXIM1 protein, humanPositive Transcriptional Elongation Factor BRibonucleoproteins, Small NuclearRNA-Binding Proteinstat Gene Products, Human Immunodeficiency VirusTranscription Factors

Identifiers

PMID17341462
PMCPMC1874611
OpenAlexW2111392257

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.