Evidence map›Paper›PMID 17339863›Full record

ReviewClinical pharmacology and therapeutics2007

The pharmacogenetics research network: from SNP discovery to clinical drug response.

K M Giacomini, C M Brett, R B Altman, N L Benowitz, M E Dolan, D A Flockhart, J A Johnson, D F Hayes, T Klein, R M Krauss and 17 more

Open access · greenAbstract readReview
In one paragraph

Review in Clinical pharmacology and therapeutics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 1 pooled it
38.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 1 synthesis or guideline pooled it, 243 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Dopamine genes and nicotine dependence in treatment-seeking and community smokers.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2009
    Trial
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Transcription-translation error:Informatics in medicine unlocked · 2021
    Article
  16. Article
  17. Pharmacogenomics in pregnancy.Seminars in perinatology · 2020
    Review
  18. Review
  19. In Silico Analysis of Coding/Noncoding SNPs of HumanJournal of diabetes research · 2019
    Article
  20. Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 16 institutions in 2 countries.

K M GiacominiDepartment of Biopharmaceutical Sciences, University of California San Francisco, San Francisco, California, USA. kathy.giacomini@ucsf.edu
C M Brett
R B Altman
N L Benowitz
M E Dolan
D A Flockhart
J A Johnson
D F Hayes
T Klein
R M Krauss
D L Kroetz
H L McLeod
A T Nguyen
M J Ratain
M V Relling
V Reus
D M Roden
C A Schaefer
A R Shuldiner
T Skaar
K Tantisira
R F Tyndale
L Wang
R M Weinshilboum
S T Weiss
I Zineh
Pharmacogenetics Research Network
University of California, San Francisco · USBrigham and Women's Hospital · USIndiana University School of MedicineMayo Clinic · USUniversity of Chicago · USUniversity of Florida · USIndiana University – Purdue University Indianapolis · USKaiser Permanente · USStanford Medicine · USStanford University · USSt. Jude Children's Research Hospital · USUniversity of Maryland, Baltimore · USUniversity of Michigan–Ann Arbor · USUniversity of North Carolina at Chapel Hill · USUniversity of Toronto · CAVanderbilt University · US

Funding

Whole GenomeU01GM061393 · NIGMS · UNIVERSITY OF CHICAGO · PI RATAIN, MARK J · 2000 to 2014
$39.0M
THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
PHARMACOGENETICS OF MEMBRANE TRANSPORTERSU01GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GIACOMINI, KATHLEEN M · 2000 to 2009
$29.2M
PharmGKB: pharmacogenomics knowledge for precision medicineR24GM061374 · NIGMS · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO, KLEIN, TERI ELLEN · 2010 to 2018
$25.2M
PHARMACOGENOMICS OF ARRHYTHMIA THERAPYU01HL065962 · NHLBI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2001 to 2009
$24.8M
Pharmacogenomics and Risk of Cardiovascular DiseaseU01HL069757 · NHLBI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KRAUSS, RONALD M · 2001 to 2009
$24.7M
THE STANFORD PHARMACOGENETICS KNOWLEDGE BASEU01GM061374 · NIGMS · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO · 2000 to 2009
$24.0M
University of Toronto Coordinating Genetics Core & Clinical Trial SiteU01DA020830 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI TYNDALE, RACHEL FYNVOLA · 2005 to 2014
$22.4M
Pharmacogenomic Evaluation of Antihypertensive ResponsesU01GM074492 · NIGMS · UNIVERSITY OF FLORIDA · PI COOPER-DEHOFF, RHONDA M, JOHNSON, JULIE A. · 2005 to 2014
$20.7M
POPULATION GENETICS AND DRUG METABOLISMU01GM063340 · NIGMS · WASHINGTON UNIVERSITY · PI MCLEOD, HOWARD L · 2001 to 2009
$17.4M
Pharmacogenomics of Arrhythmia TherapyU19HL065962 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RODEN, DAN M · 2010 to 2014
$17.4M
TAMAXIFEN PHARMACOGENETICSU01GM061373 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI FLOCKHART, DAVID ALASTAIR · 2000 to 2009
$17.0M
NHLBI NIH HHS HL60757NHLBI NIH HHS HL65899NHLBI NIH HHS HL65962NHLBI NIH HHS U01 HL065899NHLBI NIH HHS U01 HL065962NHLBI NIH HHS U01 HL069757NHLBI NIH HHS U19 HL065962NHLBI NIH HHS U19 HL069757NIDA NIH HHS DA20830NIDA NIH HHS U01 DA020830NIGMS NIH HHS GM61374NIGMS NIH HHS GM61388NIGMS NIH HHS GM61390NIGMS NIH HHS GM61393NIGMS NIH HHS GM61737NIGMS NIH HHS GM63340NIGMS NIH HHS GM74492NIGMS NIH HHS GM74518NIGMS NIH HHS R24 GM061374NIGMS NIH HHS U01 GM061373NIGMS NIH HHS U01 GM061374NIGMS NIH HHS U01 GM061388NIGMS NIH HHS U01 GM061390NIGMS NIH HHS U01 GM061393NIGMS NIH HHS U01 GM063340NIGMS NIH HHS U01 GM074492NIGMS NIH HHS U01 GM074518NIGMS NIH HHS U19 GM061388NIGMS NIH HHS U19 GM061390Wellcome Trust
6 · The paper itself

Abstract

The NIH Pharmacogenetics Research Network (PGRN) is a collaborative group of investigators with a wide range of research interests, but all attempting to correlate drug response with genetic variation. Several research groups concentrate on drugs used to treat specific medical disorders (asthma, depression, cardiovascular disease, addiction of nicotine, and cancer), whereas others are focused on specific groups of proteins that interact with drugs (membrane transporters and phase II drug-metabolizing enzymes). The diverse scientific information is stored and annotated in a publicly accessible knowledge base, the Pharmacogenetics and Pharmacogenomics Knowledge base (PharmGKB). This report highlights selected achievements and scientific approaches as well as hypotheses about future directions of each of the groups within the PGRN. Seven major topics are included: informatics (PharmGKB), cardiovascular, pulmonary, addiction, cancer, transport, and metabolism.

Indexed as

Drug TherapyPharmacogeneticsPolymorphism, Single NucleotideAnimalsCardiovascular AgentsCardiovascular DiseasesCarrier ProteinsHumansInformaticsLung DiseasesNeoplasmsPharmaceutical PreparationsPlatelet Aggregation InhibitorsSubstance-Related DisordersCardiovascular AgentsCarrier ProteinsPharmaceutical PreparationsPlatelet Aggregation Inhibitors

Identifiers

PMID17339863
PMCPMC5006950
OpenAlexW2040550914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.