ArticleGenetics2007
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis.
Article in Genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 133 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
133 citing papers in PubMed, 327 citations in OpenAlex.
- Development of Novel Markers for Yield in Hevea brasiliensis Muell. Arg. Based on Candidate Genes from Biosynthetic Pathways Associated with Latex Production.Biochemical genetics · 2022Article
- Molecular Breeding to Overcome Biotic Stresses in Soybean: Update.Plants (Basel, Switzerland) · 2022Review
- Identification of two quantitative genes controlling soybean flowering using bulked-segregant analysis and genetic mapping.Frontiers in plant science · 2022Article
- SoyMAGIC: An Unprecedented Platform for Genetic Studies and Breeding Activities in Soybean.Frontiers in plant science · 2022Article
- Article
- Field Screen and Genotyping ofInsects · 2021Article
- Identification of Finely Mapped Quantitative Trait Locus and Candidate Gene Mining for the Three-Seeded Pod Trait in Soybean.Frontiers in plant science · 2021Article
- Soybean BARCSoySNP6K: An assay for soybean genetics and breeding research.The Plant journal : for cell and molecular biology · 2020Article
- Pulse Crop Genetics for a Sustainable Future: Where We Are Now and Where We Should Be Heading.Frontiers in plant science · 2020Review
- Progresses, Challenges, and Prospects of Genome Editing in Soybean (Frontiers in plant science · 2020Review
- Responses of Soybean Genes in the Substituted Segments of Segment Substitution Lines Following aFrontiers in plant science · 2020Article
- Effect of marker segregation distortion on high density linkage map construction and QTL mapping in Soybean (Glycine max L.).Heredity · 2019Article
- Genetic Diversity and Phylogenetic Relationships of Annual and PerennialG3 (Bethesda, Md.) · 2019Article
- Development and validation of an SNP genotyping array and construction of a high-density linkage map in castor.Scientific reports · 2019Article
- Identification of a Novel Specific Cucurbitadienol Synthase Allele inMolecules (Basel, Switzerland) · 2019Article
- Volatile composition and classification ofHorticulture research · 2019Article
- Gene-based SNP identification and validation in soybean using next-generation transcriptome sequencing.Molecular genetics and genomics : MGG · 2018Article
- Development of a high-density linkage map and chromosome segment substitution lines for Japanese soybean cultivar Enrei.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- Soybean Resistance to White Mold: Evaluation of Soybean Germplasm Under Different Conditions and Validation of QTL.Frontiers in plant science · 2018Article
- Article
73 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
17 authors at 9 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The first genetic transcript map of the soybean genome was created by mapping one SNP in each of 1141 genes in one or more of three recombinant inbred line mapping populations, thus providing a picture of the distribution of genic sequences across the mapped portion of the genome. Single-nucleotide polymorphisms (SNPs) were discovered via the resequencing of sequence-tagged sites (STSs) developed from expressed sequence tag (EST) sequence. From an initial set of 9459 polymerase chain reaction primer sets designed to a diverse set of genes, 4240 STSs were amplified and sequenced in each of six diverse soybean genotypes. In the resulting 2.44 Mbp of aligned sequence, a total of 5551 SNPs were discovered, including 4712 single-base changes and 839 indels for an average nucleotide diversity of Theta= 0.000997. The analysis of the observed genetic distances between adjacent genes vs. the theoretical distribution based upon the assumption of a random distribution of genes across the 20 soybean linkage groups clearly indicated that genes were clustered. Of the 1141 genes, 291 mapped to 72 of the 112 gaps of 5-10 cM in the preexisting simple sequence repeat (SSR)-based map, while 111 genes mapped in 19 of the 26 gaps >10 cM. The addition of 1141 sequence-based genic markers to the soybean genome map will provide an important resource to soybean geneticists for quantitative trait locus discovery and map-based cloning, as well as to soybean breeders who increasingly depend upon marker-assisted selection in cultivar improvement.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.