Evidence map›Paper›PMID 17337568›Full record

ArticleJournal of bacteriology2007

Genetic analysis of Helicobacter pylori strain populations colonizing the stomach at different times postinfection.

Nina R Salama, Gerardo Gonzalez-Valencia, Brooke Deatherage, Francisco Aviles-Jimenez, John C Atherton, David Y Graham, Javier Torres

Abstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. High prevalence ofFrontiers in microbiology · 2023
    Article
  2. Article
  3. Whole-Genome-BasedFrontiers in microbiology · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Analysis of a single Helicobacter pylori strain over a 10-year period in a primate model.International journal of medical microbiology : IJMM · 2015
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Recombination and DNA repair in Helicobacter pylori.Annual review of microbiology · 2011
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nina R SalamaHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109-1024, USA. nsalama@fhcrc.org
Gerardo Gonzalez-Valencia
Brooke Deatherage
Francisco Aviles-Jimenez
John C Atherton
David Y Graham
Javier Torres

Funding

GENETIC REQUIREMENTS OF HELICOBACTER PYLORI INFECTIONR01AI054423 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Nina Salama · 2004 to 2026
$9.5M
Risk factors for gastric disease in pediatric H. pyloriR01DK053708 · NIDDK · EMORY UNIVERSITY · PI GOLD, BENJAMIN DAVID · 1997 to 2006
$1.8M
NIAID NIH HHS AI054423NIAID NIH HHS R01 AI054423NIDDK NIH HHS DK53708NIDDK NIH HHS R01 DK053708
6 · The paper itself

Abstract

Genetic diversity of the human gastric pathogen Helicobacter pylori in an individual host has been observed; whether this diversity represents diversification of a founding strain or a mixed infection with distinct strain populations is not clear. To examine this issue, we analyzed multiple single-colony isolates from two to four separate stomach biopsies of eight adult and four pediatric patients from a high-incidence Mexican population. Eleven of the 12 patients contained isolates with identical random amplified polymorphic DNA, amplified fragment length polymorphism, and vacA allele molecular footprints, whereas a single adult patient had two distinct profiles. Comparative genomic hybridization using whole-genome microarrays (array CGH) revealed variation in 24 to 67 genes in isolates from patients with similar molecular footprints. The one patient with distinct profiles contained two strain populations differing at 113 gene loci, including the cag pathogenicity island virulence genes. The two strain populations in this single host had different spatial distributions in the stomach and exhibited very limited genetic exchange. The total genetic divergence and pairwise genetic divergence between isolates from adults and isolates from children were not statistically different. We also analyzed isolates obtained 15 and 90 days after experimental infection of humans and found no evidence of genetic divergence, indicating that transmission to a new host does not induce rapid genetic changes in the bacterial population in the human stomach. Our data suggest that humans are infected with a population of closely related strains that vary at a small number of gene loci, that this population of strains may already be present when an infection is acquired, and that even during superinfection genetic exchange among distinct strains is rare.

Indexed as

AdenocarcinomaAdultAgedAged, 80 and overBase SequenceCell Line, TumorChildChild, PreschoolDNA FingerprintingFemaleGastritisGenetic VariationGenomic IslandsGenotypeHelicobacter InfectionsHelicobacter pylori

Identifiers

PMID17337568
PMCPMC1913316

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.