Evidence map›Paper›PMID 17337536›Full record

ArticleApplied and environmental microbiology2007

Diversity of lactic acid bacteria associated with fish and the fish farm environment, established by amplified rRNA gene restriction analysis.

Christian Michel, Claire Pelletier, Mekki Boussaha, Diane-Gaëlle Douet, Armand Lautraite, Patrick Tailliez

Abstract readComparative Study
In one paragraph

Article in Applied and environmental microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Microbiology spectrum · 2025
    Article
  2. Review
  3. Limited Probiotic Effect ofAnimals : an open access journal from MDPI · 2023
    Article
  4. Review
  5. Article
  6. Hydrolysis of raw fish proteins extracts byBiotechnology reports (Amsterdam, Netherlands) · 2021
    Article
  7. Lactic Acid Bacteria in Finfish-An Update.Frontiers in microbiology · 2018
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Christian MichelUnité de Virologie et d'Immunologie Moléculaires, Institut National de la Recherche Agronomique, Centre de Recherches de Jouy-en-Josas, Domaine de Vilvert, 78352 Jouy-en-Josas Cedex, France. christian.michel@jouy.inra.fr
Claire Pelletier
Mekki Boussaha
Diane-Gaëlle Douet
Armand Lautraite
Patrick Tailliez

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactic acid bacteria have become a major source of concern for aquaculture in recent decades. In addition to true pathogenic species of worldwide significance, such as Streptococcus iniae and Lactococcus garvieae, several species have been reported to produce occasional fish mortalities in limited geographic areas, and many unidentifiable or ill-defined isolates are regularly isolated from fish or fish products. To clarify the nature and prevalence of different fish-associated bacteria belonging to the lactic acid bacterium group, a collection of 57 isolates of different origins was studied and compared with a set of 22 type strains, using amplified rRNA gene restriction analysis (ARDRA). Twelve distinct clusters were delineated on the basis of ARDRA profiles and were confirmed by sequencing of sodA and 16S rRNA genes. These clusters included the following: Lactococcus raffinolactis, L. garvieae, Lactococcus l., S. iniae, S. dysgalactiae, S. parauberis, S. agalactiae, Carnobacterium spp., the Enterococcus "faecium" group, a heterogeneous Enterococcus-like cluster comprising indiscernible representatives of Vagococcus fluvialis or the recently recognized V. carniphilus, V. salmoninarum, and Aerococcus spp. Interestingly, the L. lactis and L. raffinolactis clusters appeared to include many commensals of fish, so opportunistic infections caused by these species cannot be disregarded. The significance for fish populations and fish food processing of three or four genetic clusters of uncertain or complex definition, namely, Aerococcus and Enterococcus clusters, should be established more accurately.

Indexed as

AquacultureBiodiversityPhylogenyAnimalsBacterial ProteinsBase SequenceCluster AnalysisComputational BiologyFishesModels, GeneticMolecular Sequence DataPolymorphism, Restriction Fragment LengthRNA, Ribosomal, 16SSequence Analysis, DNAStreptococcaceaeSuperoxide DismutaseBacterial ProteinsRNA, Ribosomal, 16SSodA protein, BacteriaSuperoxide Dismutase

Identifiers

PMID17337536
PMCPMC1892897

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.