ArticlePlant physiology2007
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins.
Article in Plant physiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed, 89 citations in OpenAlex.
- Gene expression and metabolic regulation of carotenoid and withanolide biosynthetic pathways in Withania somnifera with emphasis on FPPS-mediated regulation.Protoplasma · 2026Article
- Genome-Wide Identification and Characterization of bHLH Family inLife (Basel, Switzerland) · 2026Article
- Whole genome sequencing reveals transcriptional and translational elements potentially regulating biotic and abiotic stress responses in cowpea.Scientific reports · 2025Article
- Article
- Enhanced sensitivity of TAPscan v4 enables comprehensive analysis of streptophyte transcription factor evolution.The Plant journal : for cell and molecular biology · 2025Article
- Identification and Expression Analysis of the WOX Transcription Factor Family in Foxtail Millet (Genes · 2024Article
- Signatures of Transcription Factor Evolution and the Secondary Gain of Red Algae Complexity.Genes · 2021Article
- Structural and functional insights into the LBD family involved in abiotic stress and flavonoid synthases in Camellia sinensis.Scientific reports · 2019Article
- Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae.Genome biology and evolution · 2017Article
- Transcription factor repertoire in Ashwagandha (Withania somnifera) through analytics of transcriptomic resources: Insights into regulation of development and withanolide metabolism.Scientific reports · 2017Article
- A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.).BMC genomics · 2017Article
- Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction.BMC genomics · 2017Article
- Characterization of Phytochrome Interacting Factors from the MossThe Plant cell · 2017Article
- Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Review
- Review
- The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.Nature communications · 2016Article
- Transcription factors in microalgae: genome-wide prediction and comparative analysis.BMC genomics · 2016Article
- The long goodbye: the rise and fall of flavodoxin during plant evolution.Journal of experimental botany · 2014Review
- Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation.BMC plant biology · 2014Article
- PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors.Nucleic acids research · 2014Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Diversification of transcription-associated protein (TAP) families during land plant evolution is a key process yielding increased complexity of plant life. Understanding the evolutionary relationships between these genes is crucial to gain insight into plant evolution. We have determined a substantial set of TAPs that are focused on, but not limited to, land plants using PSI-BLAST searches and subsequent filtering and clustering steps. Phylogenies were created in an automated way using a combination of distance and maximum likelihood methods. Comparison of the data to previously published work confirmed their accuracy and usefulness for the majority of gene families. Evidence is presented that the flowering plant apical stem cell regulator WUSCHEL evolved from an ancestral homeobox gene that was already present after the water-to-land transition. The presence of distinct expanded gene families, such as COP1 and HIT in moss, is discussed within the evolutionary backdrop. Comparative analyses revealed that almost all angiosperm transcription factor families were already present in the earliest land plants, whereas many are missing among unicellular algae. A global analysis not only of transcription factors but also of transcriptional regulators and novel putative families is presented. A wealth of data about plant TAP families and all data accrued throughout their automated detection and analysis are made available via the PlanTAPDB Web interface. Evolutionary relationships of these genes are readily accessible to the nonexpert at a mouse-click. Initial analyses of selected gene families revealed that PlanTAPDB can easily be exerted for knowledge discovery.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.