Evidence map›Paper›PMID 17337438›Full record

ArticleNucleic acids research2007

Switched alternative splicing of oncogene CoAA during embryonal carcinoma stem cell differentiation.

Zheqiong Yang, Yang Sui, Shiqin Xiong, Sean S Liour, Andrew C Phillips, Lan Ko

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

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  15. Paraspeckles.Cold Spring Harbor perspectives in biology · 2010
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Zheqiong YangInstitute of Molecular Medicine and Genetics, Medical College of Georgia, Augusta, GA 30912, USA.
Yang Sui
Shiqin Xiong
Sean S Liour
Andrew C Phillips
Lan Ko
Institute of Molecular Medicine · INInstitute of Molecular Genetics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alternative splicing produces functionally distinct proteins participating in cellular processes including differentiation and development. CoAA is a coactivator that regulates transcription-coupled splicing and its own pre-mRNA transcript is alternatively spliced. We show here that the CoAA gene is embryonically expressed and alternatively spliced in multiple tissues to three splice variants, CoAA, CoAM and CoAR. During retinoic-acid-induced P19 stem cell differentiation, the expression of CoAA undergoes a rapid switch to its dominant negative splice variant CoAM in the cavity of the embryoid body. CoAM functionally inhibits CoAA, and their switched expression up-regulates differentiation marker Sox6. Using a CoAA minigene cassette, we find that the switched alternative splicing of CoAA and CoAM is regulated by the cis-regulating sequence upstream of the CoAA basal promoter. Consistent to this, we show that p54(nrb) and PSF induce CoAM splice variant through the cis-regulating sequence. We have previously shown that the CoAA gene is amplified in human cancers with a recurrent loss of this cis-regulating sequence. These results together suggest that the upstream regulatory sequence contributes to alternative splicing of the CoAA gene during stem cell differentiation, and its selective loss in human cancers potentially deregulates CoAA alternative splicing and alters stem cell differentiation.

Indexed as

Alternative SplicingGene Expression Regulation, NeoplasticAmino Acid SequenceAnimalsBase SequenceCarcinoma, EmbryonalCell DifferentiationCell Line, TumorDNA-Binding ProteinsEmbryonic Stem CellsGene Expression Regulation, DevelopmentalHigh Mobility Group ProteinsMiceMolecular Sequence DataNuclear Matrix-Associated ProteinsOncogene ProteinsDNA-Binding ProteinsHigh Mobility Group ProteinsNono protein, mouseNuclear Matrix-Associated ProteinsOncogene ProteinsPTB-Associated Splicing FactorRbm14 protein, mouseRNA-Binding ProteinsSox6 protein, mouseSOXD Transcription FactorsTranscription Factors

Identifiers

PMID17337438
PMCPMC1874587
OpenAlexW2151943047

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.