Evidence map›Paper›PMID 17335845›Full record

ArticleJournal of molecular biology2007

Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.

Shude Yan, Grzegorz Gawlak, Koki Makabe, Valentina Tereshko, Akiko Koide, Shohei Koide

Abstract read
In one paragraph

Article in Journal of molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. The master molecule that built biology: How water shaped the chemistry of life.Protein science : a publication of the Protein Society · 2026
    Review
  2. Structures of single-layer β-sheet proteins evolved from β-hairpin repeats.Protein science : a publication of the Protein Society · 2019
    Article
  3. Aromatic cluster mutations produce focal modulations of β-sheet structure.Protein science : a publication of the Protein Society · 2015
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shude YanDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA.
Grzegorz Gawlak
Koki Makabe
Valentina Tereshko
Akiko Koide
Shohei Koide

Funding

Subproject 5U54GM074946 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI TERWILLIGER, THOMAS C. · 2005 to 2009
$20.2M
STRUCTURE AND STABILITY OF SINGLE-LAYER BETA-SHEETSR01GM057215 · NIGMS · UNIVERSITY OF ROCHESTER · PI KOIDE, SHOHEI · 2000 to 2005
$1.1M
NIGMS NIH HHS R01 GM057215NIGMS NIH HHS R01-GM57215NIGMS NIH HHS U54 GM074946NIGMS NIH HHS U54-GM074946
6 · The paper itself

Abstract

Formation of a flat beta-sheet is a fundamental event in beta-sheet-mediated protein self-assembly. To investigate the contributions of various factors to the stability of flat beta-sheets, we performed extensive alanine-scanning mutagenesis experiments on the single-layer beta-sheet segment of Borrelia outer surface protein A (OspA). This beta-sheet segment consists of beta-strands with highly regular geometries that can serve as a building block for self-assembly. Our Ala-scanning approach is distinct from the conventional host-guest method, in that it introduces only conservative, truncation mutations that should minimize structural perturbation. Our results showed very weak correlation with experimental beta-sheet propensity scales, statistical beta-sheet propensity scales, or cross-strand pairwise correlations. In contrast, our data showed strong positive correlation with the change in buried non-polar surface area. Polar interactions including prominent Glu-Lys cross-strand pairs contribute marginally to the beta-sheet stability. These results were corroborated by results from additional non-Ala mutations. Taken together, these results demonstrate the dominant contribution of non-polar surface burial to flat beta-sheet stability even at solvent-exposed positions. The OspA single-layer beta-sheet achieves efficient hydrophobic surface burial without forming a hydrophobic core by a strategic placement of a variety of side-chains. These findings further suggest the importance of hydrophobic interactions within a beta-sheet layer in peptide self-assembly.

Indexed as

Hydrophobic and Hydrophilic InteractionsProtein FoldingAlanineAmino Acid SequenceAmino Acid SubstitutionAntigens, SurfaceBacterial Outer Membrane ProteinsBacterial VaccinesBorrelia burgdorferiCrystallography, X-RayGlutamic AcidLipoproteinsLysineModels, BiologicalModels, MolecularMolecular Sequence DataAlanineAntigens, SurfaceBacterial Outer Membrane ProteinsBacterial VaccinesGlutamic AcidLipoproteinsLysineMutant ProteinsOspA protein

Identifiers

PMID17335845
PMCPMC1995161

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.