Evidence map›Paper›PMID 17335351›Full record

ArticlePLoS genetics2007

A Caenorhabditis elegans wild type defies the temperature-size rule owing to a single nucleotide polymorphism in tra-3.

Jan E Kammenga, Agnieszka Doroszuk, Joost A G Riksen, Esther Hazendonk, Laurentiu Spiridon, Andrei-Jose Petrescu, Marcel Tijsterman, Ronald H A Plasterk, Jaap Bakker

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 113 citations in OpenAlex.

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  14. Bacteria- and temperature-regulated peptides modulate β-catenin signaling inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. The GeneG3 (Bethesda, Md.) · 2020
    Article
  16. Dissecting the eQTL Micro-Architecture inFrontiers in genetics · 2020
    Article
  17. WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.Database : the journal of biological databases and curation · 2020
    Article
  18. Wrapping culture plates with Parafilm MBMC research notes · 2019
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jan E KammengaLaboratory of Nematology, Wageningen University, Wageningen, The Netherlands. Jan.Kammenga@wur.nl
Agnieszka Doroszuk
Joost A G Riksen
Esther Hazendonk
Laurentiu Spiridon
Andrei-Jose Petrescu
Marcel Tijsterman
Ronald H A Plasterk
Jaap Bakker
Wageningen University & Research · NLHubrecht Institute for Developmental Biology and Stem Cell Research · NLInstitute of Biochemistry · RORomanian Academy · RO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ectotherms rely for their body heat on surrounding temperatures. A key question in biology is why most ectotherms mature at a larger size at lower temperatures, a phenomenon known as the temperature-size rule. Since temperature affects virtually all processes in a living organism, current theories to explain this phenomenon are diverse and complex and assert often from opposing assumptions. Although widely studied, the molecular genetic control of the temperature-size rule is unknown. We found that the Caenorhabditis elegans wild-type N2 complied with the temperature-size rule, whereas wild-type CB4856 defied it. Using a candidate gene approach based on an N2 x CB4856 recombinant inbred panel in combination with mutant analysis, complementation, and transgenic studies, we show that a single nucleotide polymorphism in tra-3 leads to mutation F96L in the encoded calpain-like protease. This mutation attenuates the ability of CB4856 to grow larger at low temperature. Homology modelling predicts that F96L reduces TRA-3 activity by destabilizing the DII-A domain. The data show that size adaptation of ectotherms to temperature changes may be less complex than previously thought because a subtle wild-type polymorphism modulates the temperature responsiveness of body size. These findings provide a novel step toward the molecular understanding of the temperature-size rule, which has puzzled biologists for decades.

Indexed as

AllelesAnimalsBody SizeBody TemperatureCaenorhabditis elegansCaenorhabditis elegans ProteinsCalciumCalpainGene Expression RegulationGenes, HelminthGenetic Complementation TestInbreedingModels, BiologicalModels, MolecularMutant ProteinsMutationCaenorhabditis elegans ProteinsCalciumCalpainMutant ProteinsThapsigarginTRA-3 protein, C elegans

Identifiers

PMID17335351
PMCPMC1808073
OpenAlexW2048578325

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.