Evidence map›Paper›PMID 17333538›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2007

The search for a marsupial XIC reveals a break with vertebrate synteny.

Lance S Davidow, Matthew Breen, Shannon E Duke, Paul B Samollow, John R McCarrey, Jeannie T Lee

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 67 citations in OpenAlex.

  1. Imprinted X chromosome inactivation in marsupials: The paternal X arrives at the egg with a silent DNA methylation profile.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  3. Article
  4. Review
  5. Escape From X-Chromosome Inactivation: An Evolutionary Perspective.Frontiers in cell and developmental biology · 2019
    Review
  6. FXYD8, a Novel Regulator of Renal NaFrontiers in physiology · 2017
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Reactivation of the inactive X chromosome in development and reprogramming.Cellular and molecular life sciences : CMLS · 2013
    Review
  12. Article
  13. Review
  14. The sex-specific region of sex chromosomes in animals and plants.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Review
  15. Review
  16. Recent advances in X-chromosome inactivation.Journal of cellular physiology · 2011
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Lance S DavidowDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA.
Matthew Breen
Shannon E Duke
Paul B Samollow
John R McCarrey
Jeannie T Lee
Massachusetts General Hospital · USNorth Carolina State University · USTexas A&M University · USThe University of Texas Health Science Center at San Antonio · US

Funding

Regulation of X-Inactivation by Non-Coding RNA LociR01GM058839 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 1999 to 2025
$6.7M
Regulation of X-chromosome Inactivation and Imprinting by Non-coding ElementsR37GM058839 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 2012 to 2021
$4.1M
Regulation of a Spermatogenesis-Specific GeneR01HD046637 · NICHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI MCCARREY, JOHN R · 2005 to 2009
$1.5M
NCRR NIH HHS RR014214NICHD NIH HHS HD46637NIGMS NIH HHS GM58839
6 · The paper itself

Abstract

X-chromosome inactivation (XCI) evolved in mammals to deal with X-chromosome dosage imbalance between the XX female and the XY male. In eutherian mammals, random XCI of the soma requires a master regulatory locus known as the 'X-inactivation center' (XIC/Xic), wherein lies the noncoding XIST/Xist silencer RNA and its regulatory antisense Tsix gene. By contrast, marsupial XCI is imprinted to occur on the paternal X chromosome. To determine whether marsupials and eutherians share the XIC-driven mechanism, we search for the sequence equivalents in the genome of the South American opossum, Monodelphis domestica. Positional cloning and bioinformatic analysis reveal several interesting findings. First, protein-coding genes that flank the eutherian XIC are well-conserved in M. domestica, as well as in chicken, frog, and pufferfish. However, in M. domestica we fail to identify any recognizable XIST or TSIX equivalents. Moreover, cytogenetic mapping shows a surprising break in synteny with eutherian mammals and other vertebrates. Therefore, during the evolution of the marsupial X chromosome, one or more rearrangements broke up an otherwise evolutionarily conserved block of vertebrate genes. The failure to find XIST/TSIX in M. domestica may suggest that the ancestral XIC is too divergent to allow for detection by current methods. Alternatively, the XIC may have arisen relatively late in mammalian evolution, possibly in eutherians with the emergence of random XCI. The latter argues that marsupial XCI does not require XIST and opens the search for alternative mechanisms of dosage compensation.

Indexed as

Evolution, MolecularGenes, X-LinkedX ChromosomeAnimalsChromosome WalkingComputational BiologyCytogenetic AnalysisDNA-Binding ProteinsFemaleGenomicsHumansMaleMonocarboxylic Acid TransportersMonodelphisRNA, Long NoncodingRNA, UntranslatedCHIC1 protein, humanDNA-Binding ProteinsMonocarboxylic Acid TransportersRNA, Long NoncodingRNA, UntranslatedSLC16A2 protein, humanSymportersTranscription FactorsXIST non-coding RNA

Identifiers

PMID17333538
OpenAlexW1997528909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.