Evidence map›Paper›PMID 17333537›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2007

Genes flanking Xist in mouse and human are separated on the X chromosome in American marsupials.

Alexander I Shevchenko, Irina S Zakharova, Eugeny A Elisaphenko, Nicolay N Kolesnikov, Siobhan Whitehead, Christine Bird, Mark Ross, Jennifer R Weidman, Randy L Jirtle, Tatiana V Karamysheva and 6 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Imprinted X chromosome inactivation in marsupials: The paternal X arrives at the egg with a silent DNA methylation profile.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Recent advances in X-chromosome inactivation.Journal of cellular physiology · 2011
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. The X as model for RNA's niche in epigenomic regulation.Cold Spring Harbor perspectives in biology · 2010
    Review
  18. Article
  19. Article
  20. Unravelling the evolutionary origins of X chromosome inactivation in mammals: insights from marsupials and monotremes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Alexander I ShevchenkoInstitute of Cytology and Genetics, Russian Academy of Sciences, Siberian Department, Novosibirsk, Russia.
Irina S Zakharova
Eugeny A Elisaphenko
Nicolay N Kolesnikov
Siobhan Whitehead
Christine Bird
Mark Ross
Jennifer R Weidman
Randy L Jirtle
Tatiana V Karamysheva
Nicolay B Rubtsov
John L VandeBerg
Nina A Mazurok
Tatyana B Nesterova
Neil Brockdorff
Suren M Zakian
Institute of Cytology and Genetics · RUWellcome Sanger Institute · GBDuke Medical Center · USHammersmith Hospital · GBTexas Biomedical Research Institute · US

Funding

Medical Research Council MC_U120031757Wellcome TrustWellcome Trust 067065/Z/02/Z
6 · The paper itself

Abstract

X inactivation, the transcriptional silencing of one of the two X chromosomes in female mammals, achieves dosage compensation of X-linked genes relative to XY males. In eutherian mammals X inactivation is regulated by the X-inactive specific transcript (Xist), a cis-acting non-coding RNA that triggers silencing of the chromosome from which it is transcribed. Marsupial mammals also undergo X inactivation but the mechanism is relatively poorly understood. We set out to analyse the X chromosome in Monodelphis domestica and Didelphis virginiana, focusing on characterizing the interval defined by the Chic1 and Slc16a2 genes that in eutherians flank the Xist locus. The synteny of this region is retained on chicken chromosome 4 where other loci belonging to the evolutionarily ancient stratum of the human X chromosome, the so-called X conserved region (XCR), are also located. We show that in both M. domestica and D. virginiana an evolutionary breakpoint has separated the Chic1 and Slc16a2 loci. Detailed analysis of opossum genomic sequences revealed linkage of Chic1 with the Lnx3 gene, recently proposed to be the evolutionary precursor of Xist, and Fip1, the evolutionary precursor of Tsx, a gene located immediately downstream of Xist in eutherians. We discuss these findings in relation to the evolution of Xist and X inactivation in mammals.

Indexed as

Chromosome MappingAnimalsCell LineChromosomes, Artificial, BacterialChromosomes, Human, XDidelphisEvolution, MolecularFemaleFibroblastsGene LibraryGenes, X-LinkedHumansMaleMiceMicrodissectionMonocarboxylic Acid TransportersMonocarboxylic Acid TransportersRNA, Long NoncodingRNA, UntranslatedXIST non-coding RNA

Identifiers

PMID17333537
PMCPMC2797855
OpenAlexW2016237667

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.