Evidence map›Paper›PMID 17333503›Full record

ArticlePlant molecular biology2007

Functional characterization of two p-coumaroyl ester 3'-hydroxylase genes from coffee tree: evidence of a candidate for chlorogenic acid biosynthesis.

Venkataramaiah Mahesh, Rachel Million-Rousseau, Pascaline Ullmann, Nathalie Chabrillange, José Bustamante, Laurence Mondolot, Marc Morant, Michel Noirot, Serge Hamon, Alexandre de Kochko and 2 more

Abstract read
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In one paragraph

Article in Plant molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 101 citations in OpenAlex.

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  15. Knockdown ofInternational journal of molecular sciences · 2022
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  20. Plants (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Venkataramaiah MaheshLaboratoire de Génomique et Qualité du café, IRD, UMR 1097 DGPC, 911 Avenue Agropolis, BP 64501, 34394, Montpellier cedex 5, France.
Rachel Million-Rousseau
Pascaline Ullmann
Nathalie Chabrillange
José Bustamante
Laurence Mondolot
Marc Morant
Michel Noirot
Serge Hamon
Alexandre de Kochko
Danièle Werck-Reichhart
Claudine Campa
Institut de Recherche pour le Développement · FRAgropolis International · FRCentre National de la Recherche Scientifique · FRCentre d'Écologie Fonctionnelle et Évolutive · FRInstitut de Biologie Moléculaire des Plantes · FRUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chlorogenic acid (5-CQA) is one of the major soluble phenolic compounds that is accumulated in coffee green beans. With other hydroxycinnamoyl quinic acids (HQAs), this compound is accumulated in particular in green beans of the cultivated species Coffea canephora. Recent work has indicated that the biosynthesis of 5-CQA can be catalyzed by a cytochrome P450 enzyme, CYP98A3 from Arabidopsis. Two full-length cDNA clones (CYP98A35 and CYP98A36) that encode putative p-coumaroylester 3'-hydroxylases (C3'H) were isolated from C. canephora cDNA libraries. Recombinant protein expression in yeast showed that both metabolized p-coumaroyl shikimate at similar rates, but that only one hydroxylates the chlorogenic acid precursor p-coumaroyl quinate. CYP98A35 appears to be the first C3'H capable of metabolising p-coumaroyl quinate and p-coumaroyl shikimate with the same efficiency. We studied the expression patterns of both genes on 4-month old C. canephora plants and found higher transcript levels in young and in highly vascularized organs for both genes. Gene expression and HQA content seemed to be correlated in these organs. Histolocalization and immunolocalization studies revealed similar tissue localization for caffeoyl quinic acids and p-coumaroylester 3'-hydroxylases. The results indicated that HQA biosynthesis and accumulation occurred mainly in the shoot tip and in the phloem of the vascular bundles. The lack of correlation between gene expression and HQA content observed in some organs is discussed in terms of transport and accumulation mechanisms.

Indexed as

Amino Acid SequenceChlorogenic AcidCoffeaCytochrome P-450 Enzyme SystemEstersMolecular Sequence DataPhylogenyPlant ProteinsQuinic AcidRecombinant Fusion ProteinsRNA, MessengerSequence Alignmentcaffeoylquinic acidChlorogenic AcidCytochrome P-450 Enzyme SystemEstersPlant ProteinsQuinic AcidRecombinant Fusion ProteinsRNA, Messenger

Identifiers

PMID17333503
OpenAlexW2121887669

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.