ArticleJournal of the American Medical Informatics Association : JAMIA
Essie: a concept-based search engine for structured biomedical text.
Article in Journal of the American Medical Informatics Association : JAMIA. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
39 citing papers in PubMed.
- Clinical Information Retrieval: A Literature Review.Journal of healthcare informatics research · 2024Article
- Effects of Porting Essie Tokenization and Normalization to Solr.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023Article
- The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications.Journal of the American Medical Informatics Association : JAMIA · 2020Article
- A manual corpus of annotated main findings of clinical case reports.Database : the journal of biological databases and curation · 2019Article
- Finding Understudied Disorders Potentially Associated with Maternal Morbidity and Mortality.AJP reports · 2019Article
- Semantic annotation of consumer health questions.BMC bioinformatics · 2018Article
- Automated classification of eligibility criteria in clinical trials to facilitate patient-trial matching for specific patient populations.Journal of the American Medical Informatics Association : JAMIA · 2017Article
- Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2017Article
- Automatic classification of registered clinical trials towards the Global Burden of Diseases taxonomy of diseases and injuries.BMC bioinformatics · 2016Article
- Previously unidentified duplicate registrations of clinical trials: an exploratory analysis of registry data worldwide.Systematic reviews · 2016Article
- Automated identification of molecular effects of drugs (AIMED).Journal of the American Medical Informatics Association : JAMIA · 2016Article
- Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning.Biomedical informatics insights · 2016Article
- Literature-based biomedical image classification and retrieval.Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society · 2015Article
- Article
- Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013.Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society · 2015Review
- Evaluating measures of semantic similarity and relatedness to disambiguate terms in biomedical text.Journal of biomedical informatics · 2013Article
- eTACTS: a method for dynamically filtering clinical trial search results.Journal of biomedical informatics · 2013Article
- Unsupervised mining of frequent tags for clinical eligibility text indexing.Journal of biomedical informatics · 2013Article
- Improving Software Sustainability: Lessons Learned fromArchiving : final program and proceedings. IS & T's Archiving Conference · 2013Article
- Leveraging user query sessions to improve searching of medical literature.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
This article describes the algorithms implemented in the Essie search engine that is currently serving several Web sites at the National Library of Medicine. Essie is a phrase-based search engine with term and concept query expansion and probabilistic relevancy ranking. Essie's design is motivated by an observation that query terms are often conceptually related to terms in a document, without actually occurring in the document text. Essie's performance was evaluated using data and standard evaluation methods from the 2003 and 2006 Text REtrieval Conference (TREC) Genomics track. Essie was the best-performing search engine in the 2003 TREC Genomics track and achieved results comparable to those of the highest-ranking systems on the 2006 TREC Genomics track task. Essie shows that a judicious combination of exploiting document structure, phrase searching, and concept based query expansion is a useful approach for information retrieval in the biomedical domain.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.