Evidence map›Paper›PMID 17329565›Full record

ArticleThe Plant cell2007

The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.

Delphine Fleury, Kristiina Himanen, Gerda Cnops, Hilde Nelissen, Tommaso Matteo Boccardi, Steven Maere, Gerrit T S Beemster, Pia Neyt, Sylvester Anami, Pedro Robles and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 160 citations in OpenAlex.

  1. Pooled it
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  16. The ubiquitin system affects agronomic plant traits.The Journal of biological chemistry · 2020
    Review
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  18. Review
  19. Article
  20. H2Bub1 RegulatesPlant physiology · 2020
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Delphine FleuryDepartment of Plant Systems Biology, Flanders Institute for Biotechnology, Ghent University, B-9052 Gent, Belgium.
Kristiina Himanen
Gerda Cnops
Hilde Nelissen
Tommaso Matteo Boccardi
Steven Maere
Gerrit T S Beemster
Pia Neyt
Sylvester Anami
Pedro Robles
José Luis Micol
Dirk Inzé
Mieke Van Lijsebettens
Ghent University · BEVlaams Instituut voor Biotechnologie · BEUniversitat de Miguel Hernández d'Elx · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin modification and transcriptional activation are novel roles for E3 ubiquitin ligase proteins that have been mainly associated with ubiquitin-dependent proteolysis. We identified HISTONE MONOUBIQUITINATION1 (HUB1) (and its homolog HUB2) in Arabidopsis thaliana as RING E3 ligase proteins with a function in organ growth. We show that HUB1 is a functional homolog of the human and yeast BRE1 proteins because it monoubiquitinated histone H2B in an in vitro assay. Hub knockdown mutants had pale leaf coloration, modified leaf shape, reduced rosette biomass, and inhibited primary root growth. One of the alleles had been designated previously as ang4-1. Kinematic analysis of leaf and root growth together with flow cytometry revealed defects in cell cycle activities. The hub1-1 (ang4-1) mutation increased cell cycle duration in young leaves and caused an early entry into the endocycles. Transcript profiling of shoot apical tissues of hub1-1 (ang4-1) indicated that key regulators of the G2-to-M transition were misexpressed. Based on the mutant characterization, we postulate that HUB1 mediates gene activation and cell cycle regulation probably through chromatin modifications.

Indexed as

ArabidopsisArabidopsis ProteinsCell CycleCell ProliferationGene Expression ProfilingGene Expression Regulation, PlantHumansLigasesMolecular Sequence DataOligonucleotide Array Sequence AnalysisPhenotypePlant LeavesPlant RootsSaccharomyces cerevisiae ProteinsTranscriptional ActivationUbiquitinArabidopsis ProteinsBre1 protein, S cerevisiaeHUB1 protein, ArabidopsisHUB1 protein, S cerevisiaeLigasesSaccharomyces cerevisiae ProteinsUbiquitinUbiquitin-Protein Ligase ComplexesUbiquitin-Protein Ligases

Identifiers

PMID17329565
PMCPMC1867331
OpenAlexW2130788976

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.