Evidence map›Paper›PMID 17329376›Full record

ArticleNucleic acids research2007

Crystal structure of the left-handed archaeal RadA helical filament: identification of a functional motif for controlling quaternary structures and enzymatic functions of RecA family proteins.

Li-Tzu Chen, Tzu-Ping Ko, Yuan-Chih Chang, Kuei-An Lin, Chia-Seng Chang, Andrew H-J Wang, Ting-Fang Wang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
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  8. Review
  9. Article
  10. Structure of a filament of stacked octamers of human DMC1 recombinase.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  11. Article
  12. Article
  13. Structure of a hexameric form of RadA recombinase from Methanococcus voltae.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
  14. A human XRCC4-XLF complex bridges DNA.Nucleic acids research · 2012
    Article
  15. Target molecular simulations of RecA family protein filaments.International journal of molecular sciences · 2012
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Li-Tzu ChenInstitute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan.
Tzu-Ping Ko
Yuan-Chih Chang
Kuei-An Lin
Chia-Seng Chang
Andrew H-J Wang
Ting-Fang Wang
Institute of Biological Chemistry, Academia Sinica · TWInstitute of Physics, Academia Sinica · TWNational Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RecA family of proteins mediates homologous recombination, an evolutionarily conserved pathway that maintains genomic stability by protecting against DNA double strand breaks. RecA proteins are thought to facilitate DNA strand exchange reactions as closed-rings or as right-handed helical filaments. Here, we report the crystal structure of a left-handed Sulfolobus solfataricus RadA helical filament. Each protomer in this left-handed filament is linked to its neighbour via interactions of a beta-strand polymerization motif with the neighbouring ATPase domain. Immediately following the polymerization motif, we identified an evolutionarily conserved hinge region (a subunit rotation motif) in which a 360 degrees clockwise axial rotation accompanies stepwise structural transitions from a closed ring to the AMP-PNP right-handed filament, then to an overwound right-handed filament and finally to the left-handed filament. Additional structural and functional analyses of wild-type and mutant proteins confirmed that the subunit rotation motif is crucial for enzymatic functions of RecA family proteins. These observations support the hypothesis that RecA family protein filaments may function as rotary motors.

Indexed as

Models, MolecularAdenosine TriphosphateAmino Acid MotifsAmino Acid SequenceArchaeal ProteinsCrystallography, X-RayDNADNA-Binding ProteinsMicroscopy, Atomic ForceMolecular Sequence DataPoint MutationProtein Structure, QuaternaryProtein SubunitsRad51 RecombinaseRec A RecombinasesRotationAdenosine TriphosphateArchaeal ProteinsDNADNA-Binding ProteinsProtein SubunitsRAD51 protein, S cerevisiaeRad51 RecombinaseRadA protein, archaealRec A RecombinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID17329376
PMCPMC1874592
OpenAlexW2129153689

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.