Evidence map›Paper›PMID 17322528›Full record

ArticleProtein science : a publication of the Protein Society2007

The molecular architecture of glucose-1-phosphate uridylyltransferase.

James B Thoden, Hazel M Holden

Abstract readComparative Study
In one paragraph

Article in Protein science : a publication of the Protein Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Mutation of Eamy_RS26425,Applied and environmental microbiology · 2026
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  7. Article
  8. Review
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  10. Review
  11. Chitin Biosynthesis inJournal of fungi (Basel, Switzerland) · 2023
    Review
  12. Review
  13. Article
  14. Cell-Free Multi-Enzyme Synthesis and Purification of Uridine Diphosphate Galactose.Chembiochem : a European journal of chemical biology · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Comparative genome analyses ofMicrobial genomics · 2020
    Article
  19. Article
  20. Frontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

James B ThodenDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Hazel M Holden

Funding

X-ray Studies of Sugar-Modifying EnzymesR01DK047814 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL M. · 1994 to 2015
$4.3M
X-ray Studies of Sugar-Modifying EnzymesR56DK047814 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL · 2006 to 2006
$88k
NIDDK NIH HHS DK47814NIDDK NIH HHS R01 DK047814NIDDK NIH HHS R56 DK047814
6 · The paper itself

Abstract

Glucose-1-phosphate uridylyltransferase, also referred to as UDP-glucose pyrophosphorylase or UGPase, catalyzes the formation of UDP-glucose from glucose-1-phosphate and UTP. Not surprisingly, given the central role of UDP-glucose in glycogen synthesis and in the production of glycolipids, glycoproteins, and proteoglycans, the enzyme is ubiquitous in nature. Interestingly, however, the prokaryotic and eukaryotic forms of the enzyme are unrelated in amino acid sequence and structure. Here we describe the cloning and structural analysis to 1.9 A resolution of the UGPase from Escherichia coli. The protein is a tetramer with 222 point group symmetry. Each subunit of the tetramer is dominated by an eight-stranded mixed beta-sheet. There are two additional layers of beta-sheet (two and three strands) and 10 alpha-helices. The overall fold of the molecule is remarkably similar to that observed for glucose-1-phosphate thymidylyltransferase in complex with its product, dTDP-glucose. On the basis of this similarity, a UDP-glucose moiety has been positioned into the active site of UGPase. This protein/product model predicts that the side chains of Gln 109 and Asp 137, respectively, serve to anchor the uracil ring and the ribose of UDP-glucose to the protein. The beta-phosphoryl group of the product is predicted to lie within hydrogen bonding distance to the epsilon-nitrogen of Lys 202 whereas the carboxylate group of Glu 201 is predicted to bridge the 2'- and 3'-hydroxyl groups of the glucosyl moiety. Details concerning the overall structure of UGPase and a comparison with glucose-1-phosphate thymidylyltransferase are presented.

Indexed as

Crystallography, X-RayEscherichia coli ProteinsModels, MolecularNucleotidyltransferasesProtein Structure, QuaternaryProtein Structure, TertiaryUTP-Glucose-1-Phosphate UridylyltransferaseEscherichia coli Proteinsglucose-1-phosphate thymidylyltransferaseNucleotidyltransferasesUTP-Glucose-1-Phosphate Uridylyltransferase

Identifiers

PMID17322528
PMCPMC2203317

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.