Evidence map›Paper›PMID 17322355›Full record

ArticleGenetics2007

Recurrent locus-specific mutation resulting from a cryptic ectopic insertion in Neurospora.

David D Perkins, Michael Freitag, Virginia C Pollard, Lori A Bailey-Shrode, Eric U Selker, Daniel J Ebbole

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. TheG3 (Bethesda, Md.) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

David D PerkinsDepartment of Biological Sciences, Stanford University, Stanford, California 94305-5020, USA.
Michael Freitag
Virginia C Pollard
Lori A Bailey-Shrode
Eric U Selker
Daniel J Ebbole
Stanford University · USTexas A&M University · USUniversity of Oregon · US

Funding

Genetic Aspects of DNA MethylationR37GM035690 · NIGMS · UNIVERSITY OF OREGON · PI SELKER, ERIC U. · 2003 to 2012
$5.2M
GENETIC ASPECTS OF DNA METHYLATIONR01GM035690 · NIGMS · UNIVERSITY OF OREGON · PI SELKER, ERIC U. · 1986 to 2016
$3.3M
GENETICS OF NEUROSPORAR01AI001462 · NIAID · STANFORD UNIVERSITY · PI PERKINS, DAVID D · 1985 to 1986
–
GENETICS OF NEUROSPORAR37AI001462 · NIAID · STANFORD UNIVERSITY · PI PERKINS, DAVID D · 1987 to 1996
–
NIAID NIH HHS AI01462NIGMS NIH HHS GM35690NIGMS NIH HHS R01 GM035690NIGMS NIH HHS R37 GM035690
6 · The paper itself

Abstract

New mutations are found among approximately 20% of progeny when one or both parents carry eas allele UCLA191 (eas(UCLA), easily wettable, hydrophobin-deficient, linkage group II). The mutations inactivate the wild-type allele of cya-8 (cytochrome aa3 deficient, linkage group VII), resulting in thin, "transparent" mycelial growth. Other eas alleles fail to produce cya-8 mutant progeny. The recurrent cya-8 mutations are attributed to repeat-induced point mutation (RIP) resulting from a duplicated copy of cya-8+ that was inserted ectopically at eas when the UCLA191 mutation occurred. As expected for RIP, eas(UCLA)-induced cya-8 mutations occur during nuclear proliferation prior to karyogamy. When only one parent is eas(UCLA), the new mutations arise exclusively in eas(UCLA) nuclei. Mutation of cya-8 is suppressed when a long unlinked duplication is present. Stable cya-8 mutations are effectively eliminated in crosses homozygous for rid, a recessive suppressor of RIP. The eas(UCLA) allele is associated with a long paracentric inversion. A discontinuity is present in eas(UCLA) DNA. The eas promoter is methylated in cya-8 progeny of eas(UCLA), presumably by the spreading of methylation beyond the adjoining RIP-inactivated duplication. These findings support a model in which an ectopic insertion that created a mutation at the target site acts as a locus-specific mutator via RIP.

Indexed as

Mutagenesis, InsertionalAllelesCell NucleusChromosome MappingCrosses, GeneticCrossing Over, GeneticDNA, FungalFertilizationGene DuplicationGenes, FungalGene SilencingGenetic LinkageHeterozygoteHomozygoteMeiosisModels, GeneticDNA, Fungal

Identifiers

PMID17322355
PMCPMC1800634
OpenAlexW2098016823

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.