Evidence map›Paper›PMID 17322327›Full record

ArticleApplied and environmental microbiology2007

Ferrous iron- and sulfur-induced genes in Sulfolobus metallicus.

Stephan Bathe, Paul R Norris

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Transcriptomic Analysis of the StrainInternational journal of molecular sciences · 2025
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  3. Frontiers in microbiology · 2025
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  9. Archaea: An Agro-Ecological Perspective.Current microbiology · 2021
    Review
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  12. Review
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  14. Article
  15. Extremely ThermoacidophilicApplied and environmental microbiology · 2019
    Article
  16. Biotechnology of extremely thermophilic archaea.FEMS microbiology reviews · 2018
    Review
  17. Review
  18. Review
  19. Article
  20. Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms.Wiley interdisciplinary reviews. Systems biology and medicine · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Stephan BatheDepartment of Biological Sciences, University of Warwick, Coventry, UK.
Paul R Norris
University of Warwick · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genes of Sulfolobus metallicus that appeared to be upregulated in relation to growth on either ferrous iron or sulfur were identified using subtractive hybridization of cDNAs. The genes upregulated during growth on ferrous iron were found in a cluster, and most were predicted to encode membrane proteins. Quantitative reverse transcription-PCR of cDNA showed upregulation of most of these genes during growth on ferrous iron and pyrite compared to results during growth on sulfur. The highest expression levels observed included those for genes encoding proteins with similarities to cytochrome c oxidase subunits and a CbsA-like cytochrome. The genes identified here that may be involved in oxidation of ferrous iron by S. metallicus are termed fox genes. Of three available genomes of Sulfolobus species (S. tokodaii, S. acidocaldarius, and S. solfataricus), only that of S. tokodaii has a cluster of highly similar open reading frames, and only S. tokodaii of these three species was also able to oxidize ferrous iron. A gene encoding sulfur oxygenase-reductase was identified as the source of the dominant transcript in sulfur-grown cells of S. metallicus, with the predicted protein showing high identities to the previously described examples from S. tokodaii and species of Acidianus.

Indexed as

Gene Expression Regulation, ArchaealGenes, ArchaealCytochromesDNA, ArchaealElectron Transport Complex IVFerrous CompoundsGene LibraryIronMembrane ProteinsMolecular Sequence DataMultigene FamilyNucleic Acid HybridizationOpen Reading FramesOxidation-ReductionOxidoreductases Acting on Sulfur Group DonorsReverse Transcriptase Polymerase Chain ReactionCytochromesDNA, ArchaealElectron Transport Complex IVFerrous CompoundsIronMembrane ProteinsOxidoreductases Acting on Sulfur Group DonorspyriteSulfidesSulfur

Identifiers

PMID17322327
PMCPMC1855616
OpenAlexW1993512617

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.