Evidence map›Paper›PMID 17322312›Full record

ArticleJournal of bacteriology2007

Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth.

Bart J F Keijser, Alex Ter Beek, Han Rauwerda, Frank Schuren, Roy Montijn, Hans van der Spek, Stanley Brul

Abstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Article
  2. Evolutionary bioenergetics of sporulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Early activation of bioenergetic metabolism powers bacterial spore germination.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Germination and Outgrowth ofMicroorganisms · 2025
    Article
  6. Review
  7. Insights intoFrontiers in cellular and infection microbiology · 2025
    Article
  8. Microbiology and molecular biology reviews : MMBR · 2024
    Review
  9. Review
  10. Review
  11. Article
  12. Quantitative Aspect ofBiology · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Bacterial Spore mRNA - What's Up With That?Frontiers in microbiology · 2020
    Review
  20. Analysis of tRNAF1000Research · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bart J F KeijserSwammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands. B.keijser@TNO.nl
Alex Ter Beek
Han Rauwerda
Frank Schuren
Roy Montijn
Hans van der Spek
Stanley Brul

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus subtilis forms dormant spores upon nutrient depletion. Under favorable environmental conditions, the spore breaks its dormancy and resumes growth in a process called spore germination and outgrowth. To elucidate the physiological processes that occur during the transition of the dormant spore to an actively growing vegetative cell, we studied this process in a time-dependent manner by a combination of microscopy, analysis of extracellular metabolites, and a genome-wide analysis of transcription. The results indicate the presence of abundant levels of late sporulation transcripts in dormant spores. In addition, the results suggest the existence of a complex and well-regulated spore outgrowth program, involving the temporal expression of at least 30% of the B. subtilis genome.

Indexed as

Gene ExpressionBacillus subtilisGene Expression ProfilingOligonucleotide Array Sequence AnalysisRNA, BacterialRNA, MessengerSpores, BacterialTime FactorsTranscription, GeneticRNA, BacterialRNA, Messenger

Identifiers

PMID17322312
PMCPMC1855883

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.