Evidence map›Paper›PMID 17319696›Full record

ArticleBiochemistry2007

No evidence from FTIR difference spectroscopy that aspartate-342 of the D1 polypeptide ligates a Mn ion that undergoes oxidation during the S0 to S1, S1 to S2, or S2 to S3 transitions in photosystem II.

Melodie A Strickler, Lee M Walker, Warwick Hillier, R David Britt, Richard J Debus

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Article
  3. Substitution of the D1-AsnThe Journal of biological chemistry · 2018
    Article
  4. Quantum mechanics/molecular mechanics simulation of the ligand vibrations of the water-oxidizing MnProceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  5. Warwick Hillier: a tribute.Photosynthesis research · 2014
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. On the structure of the manganese complex of photosystem II: extended-range EXAFS data and specific atomic-resolution models for four S-states.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2008
    Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Melodie A StricklerDepartment of Biochemistry, University of California, Riverside, California 92521-0129, USA.
Lee M Walker
Warwick Hillier
R David Britt
Richard J Debus
Australian National University · AUUniversity of California, Davis · USUniversity of California, Riverside · US

Funding

PULSED EPR STUDIES OF BIOLOGICAL MANGANESE CLUSTERSR01GM048242 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI BRITT, R DAVID · 1997 to 2010
$2.5M
FTIR Studies of Photosynthetic Oxygen EvolutionR01GM076232 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DEBUS, RICHARD J · 2006 to 2009
$854k
EPR &Optical Studies of Photosynthetic Water OxidationR01GM066136 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DEBUS, RICHARD J · 2002 to 2005
$746k
PULSED EPR STUDIES OF BIOLOGICAL MANGANESE CLUSTERSR29GM048242 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI BRITT, R DAVID · 1992 to 1996
–
NIGMS NIH HHS GM 048242NIGMS NIH HHS GM 066136NIGMS NIH HHS GM 076232NIGMS NIH HHS R01 GM048242NIGMS NIH HHS R01 GM066136NIGMS NIH HHS R01 GM076232NIGMS NIH HHS R29 GM048242
6 · The paper itself

Abstract

In the recent X-ray crystallographic structural models of photosystem II, Asp342 of the D1 polypeptide is assigned as a ligand of the oxygen-evolving Mn4 cluster. To determine if D1-Asp342 ligates a Mn ion that undergoes oxidation during one or more of the S0 --> S1, S1 --> S2, and S2 --> S3 transitions, the FTIR difference spectra of the individual S state transitions in D1-D342N mutant PSII particles from the cyanobacterium Synechocystis sp. PCC 6803 were compared with those in wild-type PSII particles. Remarkably, the data show that the mid-frequency (1800-1200 cm-1) FTIR difference spectra of wild-type and D1-D342N PSII particles are essentially identical. Importantly, the mutation alters none of the carboxylate vibrational modes that are present in the wild-type spectra. The absence of significant mutation-induced spectral alterations in D1-D342N PSII particles shows that the oxidation of the Mn4 cluster does not alter the frequencies of the carboxylate stretching modes of D1-Asp342 during the S0 --> S1, S1 --> S2, or S2 --> S3 transitions. One explanation of these data is that D1-Asp342 ligates a Mn ion that does not increase its charge or oxidation state during any of these S state transitions. However, because the same conclusion was reached previously for D1-Asp170, and because the recent X-ray crystallographic structural models assign D1-Asp170 and D1-Asp342 as ligating different Mn ions, this explanation requires that (1) the extra positive charge that develops on the Mn4 cluster during the S1 --> S2 transition be localized on the Mn ion that is ligated by the alpha-COO- group of D1-Ala344 and (2) any increase in positive charge that develops on the Mn4 cluster during the S0 --> S1 and S2 --> S3 transitions be localized on the one Mn ion that is not ligated by D1-Asp170, D1-Asp342, or D1-Ala344. In separate experiments that were conducted with l-[1-13C]alanine, we found no evidence that D1-Asp342 ligates the same Mn ion that is ligated by the alpha-COO- group of D1-Ala344.

Indexed as

Amino Acid SequenceAspartic AcidLigandsManganeseOxidation-ReductionPhotosystem II Protein ComplexPoint MutationSpectroscopy, Fourier Transform InfraredSynechocystisAspartic AcidLigandsManganesePhotosystem II Protein Complex

Identifiers

PMID17319696
PMCPMC2517077
OpenAlexW2042982470

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.