Evidence map›Paper›PMID 17318366›Full record

ArticleJournal of biomolecular NMR2007

Combined solid state and solution NMR studies of alpha,epsilon-15N labeled bovine rhodopsin.

Karla Werner, Ines Lehner, Harpreet Kaur Dhiman, Christian Richter, Clemens Glaubitz, Harald Schwalbe, Judith Klein-Seetharaman, H Gobind Khorana

Abstract readEvaluation Study
PubMed Publisher
In one paragraph

Article in Journal of biomolecular NMR, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Gobind's last graduate student.Biophysical reviews · 2023
    Article
  2. Magic angle spinning NMR of G protein-coupled receptors.Progress in nuclear magnetic resonance spectroscopy · 2022
    Review
  3. Review
  4. Light Dynamics of the Retinal-Disease-Relevant G90D Bovine Rhodopsin Mutant.Angewandte Chemie (International ed. in English) · 2020
    Article
  5. Influence of Arrestin on the Photodecay of Bovine Rhodopsin.Angewandte Chemie (International ed. in English) · 2015
    Article
  6. Review
  7. Article
  8. Review
  9. Isotope labeling in mammalian cells.Methods in molecular biology (Clifton, N.J.) · 2012
    Article
  10. Article
  11. Article
  12. Structure and function of G protein-coupled receptors using NMR spectroscopy.Progress in nuclear magnetic resonance spectroscopy · 2010
    Review
  13. Article
  14. Article
  15. Structure and topology of monomeric phospholamban in lipid membranes determined by a hybrid solution and solid-state NMR approach.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Karla WernerCenter for Biomolecular Magnetic Resonance, Johann Wolfgang Goethe-Universität Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt/Main, Germany.
Ines Lehner
Harpreet Kaur Dhiman
Christian Richter
Clemens Glaubitz
Harald Schwalbe
Judith Klein-Seetharaman
H Gobind Khorana
Goethe University Frankfurt · DEMassachusetts Institute of Technology · USUniversity of Pittsburgh · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhodopsin is the visual pigment of the vertebrate rod photoreceptor cell and is the only member of the G protein coupled receptor family for which a crystal structure is available. Towards the study of dynamics in rhodopsin, we report NMR-spectroscopic investigations of alpha,epsilon-15N-tryptophan labeled rhodopsin in detergent micelles and reconstituted in phospholipids. Using a combination of solid state 13C,15N-REDOR and HETCOR experiments of all possible 13C'(i-1) carbonyl/15N(i)-tryptophan isotope labeled amide pairs, and H/D exchange 1H,15N-HSQC experiments conducted in solution, we assigned chemical shifts to all five rhodopsin tryptophan backbone 15N nuclei and partially to their bound protons. 1H,15N chemical shift assignment was achieved for indole side chains of Trp35(1.30) and Trp175(4.65). 15N chemical shifts were found to be similar when comparing those obtained in the native like reconstituted lipid environment and those obtained in detergent micelles for all tryptophans except Trp175(4.65) at the membrane interface. The results suggest that the integrated solution and solid state NMR approach presented provides highly complementary information in the study of structure and dynamics of large membrane proteins like rhodopsin.

Indexed as

Amino Acid SequenceAnimalsCattleIsotope LabelingMolecular Sequence DataNitrogen IsotopesNuclear Magnetic Resonance, BiomolecularProtein Structure, SecondaryRhodopsinSolutionsTryptophanNitrogen IsotopesRhodopsinSolutionsTryptophan

Identifiers

PMID17318366
OpenAlexW2027299323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.