Evidence map›Paper›PMID 17314406›Full record

ArticleMolecular biology of the cell2007

Sensory ciliogenesis in Caenorhabditis elegans: assignment of IFT components into distinct modules based on transport and phenotypic profiles.

Guangshuo Ou, Makato Koga, Oliver E Blacque, Takashi Murayama, Yasumi Ohshima, Jenny C Schafer, Chunmei Li, Bradley K Yoder, Michel R Leroux, Jonathan M Scholey

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 143 citations in OpenAlex.

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  14. Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. The IFT20 homolog inmicroPublication biology · 2021
    Article
  16. Article
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  19. Review
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Guangshuo OuCenter for Genetics and Development, Section of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA.
Makato Koga
Oliver E Blacque
Takashi Murayama
Yasumi Ohshima
Jenny C Schafer
Chunmei Li
Bradley K Yoder
Michel R Leroux
Jonathan M Scholey
Kyushu University · JPSimon Fraser University · CAUniversity of Alabama at Birmingham · USUniversity of California, Davis · US

Funding

UAB Recessive PKD Research and Translational Core CenterP30DK074038 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YODER, BRADLEY K. · 2005 to 2019
$16.6M
NOVEL KINESIN RELATED MOTOR PROTEINR01GM050718 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI SCHOLEY, JONATHAN M. · 1994 to 2010
$2.8M
NIDDK NIH HHS P30 DK074038NIGMS NIH HHS GM50718NIGMS NIH HHS R01 GM050718
6 · The paper itself

Abstract

Sensory cilium biogenesis within Caenorhabditis elegans neurons depends on the kinesin-2-dependent intraflagellar transport (IFT) of ciliary precursors associated with IFT particles to the axoneme tip. Here we analyzed the molecular organization of the IFT machinery by comparing the in vivo transport and phenotypic profiles of multiple proteins involved in IFT and ciliogenesis. Based on their motility in wild-type and bbs (Bardet-Biedl syndrome) mutants, IFT proteins were classified into groups with similar transport profiles that we refer to as "modules." We also analyzed the distribution and transport of fluorescent IFT particles in multiple known ciliary mutants and 49 new ciliary mutants. Most of the latter mutants were snip-SNP mapped and one, namely dyf-14(ks69), was cloned and found to encode a conserved protein essential for ciliogenesis. The products of these ciliogenesis genes could also be assigned to the aforementioned set of modules or to specific aspects of ciliogenesis, based on IFT particle dynamics and ciliary mutant phenotypes. Although binding assays would be required to confirm direct physical interactions, the results are consistent with the hypothesis that the C. elegans IFT machinery has a modular design, consisting of modules IFT-subcomplex A, IFT-subcomplex B, and a BBS protein complex, in addition to motor and cargo modules, with each module contributing to distinct functional aspects of IFT or ciliogenesis.

Indexed as

AnimalsAnimals, Genetically ModifiedBiological Transport, ActiveCaenorhabditis elegansCaenorhabditis elegans ProteinsCiliaGenes, HelminthGreen Fluorescent ProteinsMicroscopy, FluorescenceModels, BiologicalMutationPhenotypeRecombinant Fusion ProteinsCaenorhabditis elegans ProteinsGreen Fluorescent ProteinsRecombinant Fusion Proteins

Identifiers

PMID17314406
PMCPMC1855012
OpenAlexW2116467841

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.