Evidence map›Paper›PMID 17306630›Full record

ArticleGene expression patterns : GEP2007

Expression of the G protein gammaT1 subunit during zebrafish development.

Hui Chen, Tinchung Leung, Kathryn E Giger, Anna M Stauffer, Jasper E Humbert, Soniya Sinha, Eric J Horstick, Carl A Hansen, Janet D Robishaw

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Biochemistry and physiology of zebrafish photoreceptors.Pflugers Archiv : European journal of physiology · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Evolution of vertebrate rod and cone phototransduction genes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Hui ChenWeis Center for Research, Geisinger Health System, Danville, PA 17822, USA.
Tinchung Leung
Kathryn E Giger
Anna M Stauffer
Jasper E Humbert
Soniya Sinha
Eric J Horstick
Carl A Hansen
Janet D Robishaw
Geisinger Health System · USBloomsburg University · US

Funding

G PROTEIN--SIGNIFICANCE OF B &Y SUBUNIT HETEROGENEITYR01GM039867 · NIGMS · WEIS CENTER FOR RESEARCH-GEISINGER CLINC · PI ROBISHAW, JANET D · 1993 to 2010
$3.1M
G PROTEIN BETA GAMMA SIGNALING SYSTEMS IN VIVOR01GM058191 · NIGMS · WEIS CENTER FOR RESEARCH-GEISINGER CLINC · PI ROBISHAW, JANET D · 1998 to 2007
$1.6M
NIGMS NIH HHS GM58191NIGMS NIH HHS R01 GM039867NIGMS NIH HHS R01 GM058191
6 · The paper itself

Abstract

Here, we report the identification and expression analysis of the zebrafish G protein gammaT1 subunit gene (gngT1) during development. Similar to its human and mouse homologs, we confirm zebrafish gngT1 is expressed in the developing retina, where its transcription overlaps with the photoreceptor cell-specific marker, rhodopsin (rho). Surprisingly, we also show zebrafish gngT1 is expressed in the dorsal diencephalon, where its transcription overlaps with the pineal specific markers, arylalkylamine N-acetyltransferase-2 (annat-2) and extra-ocular rhodopsin (exorh). Analysis of the proximal promoter sequence of the zebrafish gngT1 gene identifies several conserved binding sites for the cone-rod homeobox/orthodenticle (Crx/Otx) homeodomain family of transcription factors. Using a morpholino anti-sense approach in zebrafish, we show that targeted knockdown of otx5 potently suppresses gngT1 expression in the pineal gland, whereas knockdown of crx markedly reduces gngT1 expression in the retina. Taken together, these data indicate that pineal- and retinal-specific expression of the gngT1 gene are controlled by different transcription factors and exogenous signals.

Indexed as

Gene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsBase SequenceCloning, MolecularGTP-Binding Protein gamma SubunitsHomeodomain ProteinsIn Situ HybridizationMolecular Sequence DataOligonucleotides, AntisenseOtx Transcription FactorsPhotoreceptor CellsPineal GlandRetinaRhodopsinRNA Probescone rod homeobox proteinGngT1 protein, zebrafishGTP-Binding Protein gamma SubunitsHomeodomain ProteinsOligonucleotides, AntisenseOtx Transcription FactorsRhodopsinRNA ProbesTrans-ActivatorsZebrafish Proteins

Identifiers

PMID17306630
PMCPMC2754307
OpenAlexW1963879756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.