Evidence map›Paper›PMID 17304213›Full record

ArticleThe EMBO journal2007

Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.

Makoto Hayashi, Yuki Katou, Takehiko Itoh, Atsutoshi Tazumi, Mitsutoshi Tazumi, Yoshiki Yamada, Tatsuro Takahashi, Takuro Nakagawa, Katsuhiko Shirahige, Hisao Masukata

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 175 citations in OpenAlex.

  1. Article
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  9. Article
  10. Origins of DNA replication.PLoS genetics · 2019
    Review
  11. Article
  12. Review
  13. Review
  14. Dynamics of DNA replication in a eukaryotic cell.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
    Tazumi, Mitsutoshi [corrected to Tazumi, Atsutoshi]
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Makoto HayashiDepartment of Biology, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan.
Yuki Katou
Takehiko Itoh
Atsutoshi Tazumi
Mitsutoshi Tazumi
Yoshiki Yamada
Tatsuro Takahashi
Takuro Nakagawa
Katsuhiko Shirahige
Hisao Masukata
Osaka University · JPMitsubishi Research Institute (Japan) · JPTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA replication of eukaryotic chromosomes initiates at a number of discrete loci, called replication origins. Distribution and regulation of origins are important for complete duplication of the genome. Here, we determined locations of Orc1 and Mcm6, components of pre-replicative complex (pre-RC), on the whole genome of Schizosaccharomyces pombe using a high-resolution tiling array. Pre-RC sites were identified in 460 intergenic regions, where Orc1 and Mcm6 colocalized. By mapping of 5-bromo-2'-deoxyuridine (BrdU)-incorporated DNA in the presence of hydroxyurea (HU), 307 pre-RC sites were identified as early-firing origins. In contrast, 153 pre-RC sites without BrdU incorporation were considered to be late and/or inefficient origins. Inactivation of replication checkpoint by Cds1 deletion resulted in BrdU incorporation with HU specifically at the late origins. Early and late origins tend to distribute separately in large chromosome regions. Interestingly, pericentromeric heterochromatin and the silent mating-type locus replicated in the presence of HU, whereas the inner centromere or subtelomeric heterochromatin did not. Notably, MCM did not bind to inner centromeres where origin recognition complex was located. Thus, replication is differentially regulated in chromosome domains.

Indexed as

Genome, FungalCell CycleCell Cycle ProteinsCentromereCheckpoint Kinase 2Chromosomes, FungalDideoxynucleosidesDNA, IntergenicDNA ReplicationElectrophoresis, Gel, Two-DimensionalHeterochromatinHydroxyureaMinichromosome Maintenance Complex Component 6Oligonucleotide Array Sequence AnalysisOrigin Recognition ComplexProtein Serine-Threonine Kinases5-bromo-2',3'-dideoxyuridineCds1 protein, S pombeCell Cycle ProteinsCheckpoint Kinase 2DideoxynucleosidesDNA, IntergenicHeterochromatinHydroxyureamcm6 protein, S pombeMinichromosome Maintenance Complex Component 6Origin Recognition ComplexProtein Serine-Threonine KinasesSchizosaccharomyces pombe Proteins

Identifiers

PMID17304213
PMCPMC1817633
OpenAlexW2132779860

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.