ArticleBMC plant biology2007
ESTs from a wild Arachis species for gene discovery and marker development.
Article in BMC plant biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.
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Who cites it
51 citing papers in PubMed, 124 citations in OpenAlex.
- Development and Genetic Characterization of Peanut Advanced Backcross Lines That Incorporate Root-Knot Nematode Resistance FromFrontiers in plant science · 2021Article
- High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Dissection of the genetic basis of oil content in Chinese peanut cultivars through association mapping.BMC genetics · 2020Article
- A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea).Scientific reports · 2019Article
- A new source of root-knot nematode resistance from Arachis stenosperma incorporated into allotetraploid peanut (Arachis hypogaea).Scientific reports · 2019Article
- Introgression of peanut smut resistance from landraces to elite peanut cultivars (Arachis hypogaea L.).PloS one · 2019Article
- New tools to screen wild peanut species for aflatoxin accumulation and genetic fingerprinting.BMC plant biology · 2018Article
- Chromosomes A07 and A05 associated with stable and major QTLs for pod weight and size in cultivated peanut (Arachis hypogaea L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- A SNP-Based Linkage Map Revealed QTLs for Resistance to Early and Late Leaf Spot Diseases in Peanut (Frontiers in plant science · 2018Article
- Mapping Late Leaf Spot Resistance in Peanut (Frontiers in plant science · 2018Article
- Article
- Enriching Genomic Resources and Marker Development from Transcript Sequences ofInternational journal of genomics · 2017Article
- Recombinants from the crosses between amphidiploid and cultivated peanut (Arachis hypogaea) for pest-resistance breeding programs.PloS one · 2017Article
- Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.).Scientific reports · 2016Article
- Genomic survey sequencing for development and validation of single-locus SSR markers in peanut (Arachis hypogaea L.).BMC genomics · 2016Article
- Molecular marker development from transcript sequences and germplasm evaluation for cultivated peanut (Arachis hypogaea L.).Molecular genetics and genomics : MGG · 2016Article
- Characterization and Transferable Utility of Microsatellite Markers in the Wild and Cultivated Arachis Species.PloS one · 2016Article
- Genetic Mapping of Resistance to Meloidogyne arenaria in Arachis stenosperma: A New Source of Nematode Resistance for Peanut.G3 (Bethesda, Md.) · 2015Article
- Peanut rust (Puccinia arachidis Speg.) disease: its background and recent accomplishments towards disease resistance breeding.Protoplasma · 2015Review
- Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
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Authors and funding
7 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundDue to its origin, peanut has a very narrow genetic background. Wild relatives can be a source of genetic variability for cultivated peanut. In this study, the transcriptome of the wild species Arachis stenosperma accession V10309 was analyzed.
resultsESTs were produced from four cDNA libraries of RNAs extracted from leaves and roots of A. stenosperma. Randomly selected cDNA clones were sequenced to generate 8,785 ESTs, of which 6,264 (71.3%) had high quality, with 3,500 clusters: 963 contigs and 2537 singlets. Only 55.9% matched homologous sequences of known genes. ESTs were classified into 23 different categories according to putative protein functions. Numerous sequences related to disease resistance, drought tolerance and human health were identified. Two hundred and six microsatellites were found and markers have been developed for 188 of these. The microsatellite profile was analyzed and compared to other transcribed and genomic sequence data.
conclusionThis is, to date, the first report on the analysis of transcriptome of a wild relative of peanut. The ESTs produced in this study are a valuable resource for gene discovery, the characterization of new wild alleles, and for marker development. The ESTs were released in the [GenBank:EH041934 to EH048197].
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