Evidence map›Paper›PMID 17294256›Full record

ArticlePlant molecular biology2007

Impact of the loss of AtMSH2 on double-strand break-induced recombination between highly diverged homeologous sequences in Arabidopsis thaliana germinal tissues.

Jacqueline Lafleuriel, Fabienne Degroote, Annie Depeiges, Georges Picard

Abstract read
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In one paragraph

Article in Plant molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Effects ofFrontiers in plant science · 2020
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Effects of suppressing the DNA mismatch repair system on homeologous recombination in tomato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jacqueline LafleurielUMR CNRS 6547 GEEM-BIOMOVE, Université Blaise Pascal, Aubiere Cedex, France.
Fabienne Degroote
Annie Depeiges
Georges Picard
Université Clermont Auvergne · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We experimented a novel reporter system to analyze intrachromosomal recombination between homeologous sequences in Arabidopsis germ cell lineages. The recombination substrates used are the BAR and PAT genes which diverge by about 13% at the nucleotide level and confer resistance to the herbicide glufosinate. DNA double-strand breaks (DSBs) were generated by the I-Sce1 endonuclease to induce recombination. Loss of AtMSH2 induces a 3-fold increase of the frequency of recombination events indicating that AtMSH2 is involved in the anti-recombination activity that prevents exchange between highly diverged sequences in Arabidopsis. Molecular analysis of recombined alleles indicates that in wild type plants the single strand annealing (SSA) pathway can process more efficiently homologous 3' ends than 3' ends generated by resection of non-homologous overhangs. The loss of AtMSH2 disturbs this process, leading to a modification of the distribution of the BAR/PAT junctions and therefore showing that the MSH2 function is also involved in determining the structure of the recombined alleles. In addition, conversion tracts were observed in some alleles. They are shorter in MSH2 deficient plants than in wild-type, suggesting that a short-patch mismatch repair, not controlled by MSH2, could exist in Arabidopsis.

Indexed as

DNA Breaks, Double-StrandedAllelesAminobutyratesArabidopsisArabidopsis ProteinsBase Pair MismatchBase SequenceChromosome SegregationCrosses, GeneticDeoxyribonucleases, Type II Site-SpecificDNA, BacterialDNA, PlantDNA RepairGenetic VectorsGenotypeHerbicidesAminobutyratesArabidopsis ProteinsDeoxyribonucleases, Type II Site-SpecificDNA, BacterialDNA, PlantHerbicidesMSH2 protein, ArabidopsisMutS Homolog 2 ProteinphosphinothricinSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiaeT-DNA

Identifiers

PMID17294256
OpenAlexW2040493717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.