Evidence map›Paper›PMID 17293863›Full record

ArticleNature genetics2007

X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.

Sevinc Ercan, Paul G Giresi, Christina M Whittle, Xinmin Zhang, Roland D Green, Jason D Lieb

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 126 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Sharks and rays have the oldest vertebrate sex chromosome with unique sex determination mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
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  11. The X chromosome in C. elegans sex determination and dosage compensation.Current opinion in genetics & development · 2022
    Review
  12. Review
  13. Article
  14. Thermosensitive sex chromosome dosage compensation in ZZ/ZW softshell turtles,Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Article
  15. Review
  16. Article
  17. Binding of anGenetics · 2019
    Article
  18. Article
  19. Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sevinc ErcanDepartment of Biology and Carolina Center for the Genome Sciences, 202 Fordham Hall, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3280, USA.
Paul G Giresi
Christina M Whittle
Xinmin Zhang
Roland D Green
Jason D Lieb
University of North Carolina at Chapel Hill · US

Funding

Identification of DNA Elements Governing Chromatin Function in C elegansU01HG004270 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIEB, JASON D · 2007 to 2011
$9.7M
NHGRI NIH HHS U01 HG004270
6 · The paper itself

Abstract

Among organisms with chromosome-based mechanisms of sex determination, failure to equalize expression of X-linked genes between the sexes is typically lethal. In C. elegans, XX hermaphrodites halve transcription from each X chromosome to match the output of XO males. Here, we mapped the binding location of the condensin homolog DPY-27 and the zinc finger protein SDC-3, two components of the C. elegans dosage compensation complex (DCC). We observed strong foci of DCC binding on X, surrounded by broader regions of localization. Binding foci, but not adjacent regions of localization, were distinguished by clusters of a 10-bp DNA motif, suggesting a recruitment-and-spreading mechanism for X recognition. The DCC was preferentially bound upstream of genes, suggesting modulation of transcriptional initiation and polymerase-coupled spreading. Stronger DCC binding upstream of genes with high transcriptional activity indicated a mechanism for tuning DCC activity at specific loci. These data aid in understanding how proteins involved in higher-order chromosome dynamics can regulate transcription at individual loci.

Indexed as

Transcription Initiation SiteX Chromosome InactivationAnimalsBase SequenceBinding SitesCaenorhabditis elegansEmbryo, NonmammalianModels, GeneticMolecular Sequence DataOligonucleotide Array Sequence AnalysisX Chromosome

Identifiers

PMID17293863
PMCPMC2753834
OpenAlexW2034834077

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.