Evidence map›Paper›PMID 17293459›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Molecular analysis of human forearm superficial skin bacterial biota.

Zhan Gao, Chi-hong Tseng, Zhiheng Pei, Martin J Blaser

Registry-linked trialAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00605878 (Studies of Skin Microflora in Healthy Individuals and Atopic Dermatitis Patients), which is not on this map. Cited by 281 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
281citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00605878 recruitingnot on this mapstarted 2008, after this paper: background citation

Studies of Skin Microflora in Healthy Individuals and Atopic Dermatitis Patients

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2008Enrolled530ConditionsEczema, Atopic Dermatitis
3 · Its place in the literature

Who cites it

281 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Trial
  4. Insights into bacterial colonization of intensive care patients' skin: the effect of chlorhexidine daily bathing.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2015
    Trial
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. The Application of Culturomics to Explore African Skin Microbiota.The American journal of tropical medicine and hygiene · 2024
    Article
  16. Article
  17. Article
  18. Feasibility of engineeredBioengineering & translational medicine · 2024
    Article
  19. Article
  20. Longitudinal Lower Airway Microbial Signatures of Acute Cellular Rejection in Lung Transplantation.American journal of respiratory and critical care medicine · 2024
    Article

221 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zhan GaoDepartment of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Chi-hong Tseng
Zhiheng Pei
Martin J Blaser

Funding

ZOPOLRESTAT IN SUBJECTS W/ PERIPHERAL SYMMETRICAL DIABETIC POLYNEUROPATHYM01RR000096 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BORKOWSKY, WILLIAM · 1985 to 2008
$34.8M
MATHEMATICAL MODELS OF H PYLORI GASTRIC COLONIZATIONR01GM063270 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BLASER, MARTIN J · 2000 to 2013
$3.1M
Etiology &pathogenesis of chronic tonsillar hypertrophyR01AI063477 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PEI, ZHIHENG · 2005 to 2009
$1.6M
Bacterial flora in normal esophagus &reflux disordersR01CA097946 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PEI, ZHIHENG · 2002 to 2005
$950k
NCI NIH HHS CA 97946NCI NIH HHS R01 CA097946NCRR NIH HHS M01 RR000096NCRR NIH HHS M01 RR 00096NIAID NIH HHS AI 063477NIAID NIH HHS R01 AI063477NIGMS NIH HHS R01 GM063270NIGMS NIH HHS R01 GM 63270
6 · The paper itself

Abstract

The microbial ecology of human skin is complex, but little is known about its species composition. We examined the diversity of the skin biota from the superficial volar left and right forearms in six healthy subjects using broad-range small subunit rRNA genes (16S rDNA) PCR-based sequencing of randomly selected clones. For the initial 1,221 clones analyzed, 182 species-level operational taxonomic units (SLOTUs) belonging to eight phyla were identified, estimated as 74.0% [95% confidence interval (C.I.), approximately 64.8-77.9%] of the SLOTUs in this ecosystem; 48.0 +/- 12.2 SLOTUs were found in each subject. Three phyla (Actinobacteria, Firmicutes, and Proteobacteria) accounted for 94.6% of the clones. Most (85.3%) of the bacterial sequences corresponded to known and cultivated species, but 98 (8.0%) clones, comprising 30 phylotypes, had <97% similarity to prior database sequences. Only 6 (6.6%) of the 91 genera and 4 (2.2%) of the 182 SLOTUs, respectively, were found in all six subjects. Analysis of 817 clones obtained 8-10 months later from four subjects showed additional phyla (numbering 2), genera (numbering 28), and SLOTUs (numbering 65). Only four (3.4%) of the 119 genera (Propionibacteria, Corynebacteria, Staphylococcus, and Streptococcus) were observed in each subject tested twice, but these genera represented 54.4% of all clones. These results show that the bacterial biota in normal superficial skin is highly diverse, with few well conserved and well represented genera, but otherwise low-level interpersonal consensus.

Indexed as

BiodiversityAdultBacteriaClone CellsDNA, BacterialDNA, RibosomalFemaleForearmHumansMaleMiddle AgedMolecular Sequence DataPhylogenySkinDNA, BacterialDNA, Ribosomal

Identifiers

PMID17293459
PMCPMC1815283

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.