Evidence map›Paper›PMID 17293424›Full record

ArticleJournal of bacteriology2007

YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity.

Xue-Song Zhang, Rodolfo García-Contreras, Thomas K Wood

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 225 citations in OpenAlex.

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49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xue-Song ZhangArtie McFerrin Department of Chemical Engineering, Texas A & M University, College Station, TX 77843-3122, USA. Thomas.Wood@chemail.tamu.edu
Rodolfo García-Contreras
Thomas K Wood
Texas A&M University · US

Funding

Plant Biofilm Inhibitors to Discover Biofilm GenesR01EB003872 · NIBIB · TEXAS ENGINEERING EXPERIMENT STATION · PI WOOD, THOMAS K · 2005 to 2008
$1.2M
NIBIB NIH HHS EB003872-01A1NIBIB NIH HHS R01 EB003872
6 · The paper itself

Abstract

DNA microarrays revealed that expression of ycfR, which encodes a putative outer membrane protein, is significantly induced in Escherichia coli biofilms and is also induced by several stress conditions. We show that deletion of ycfR increased biofilm formation fivefold in the presence of glucose; the glucose effect was corroborated by showing binding of the cyclic AMP receptor protein to the ycfR promoter. It appears that YcfR is a multiple stress resistance protein, since deleting ycfR also rendered the cell more sensitive to acid, heat treatment, hydrogen peroxide, and cadmium. Increased biofilm formation through YcfR due to stress appears to be the result of decreasing indole synthesis, since a mutation in the tnaA gene encoding tryptophanase prevented enhanced biofilm formation upon stress and adding indole prevented enhanced biofilm formation upon stress. Deleting ycfR also affected outer membrane proteins and converted the cell from hydrophilic to hydrophobic, as well as increased cell aggregation fourfold. YcfR seems to be involved in the regulation of E. coli K-12 biofilm formation by decreasing cell aggregation and cell surface adhesion, by influencing the concentration of signal molecules, and by interfering with stress responses. Based on our findings, we propose that this locus be named bhsA, for influencing biofilm through hydrophobicity and stress response.

Indexed as

AcidsBacterial Outer Membrane ProteinsBiofilmsCulture MediaCyclic AMP Receptor ProteinEscherichia coli K12Escherichia coli ProteinsGene Expression Regulation, BacterialGlucoseHeat-Shock ProteinsHot TemperatureHydrogen PeroxideHydrophobic and Hydrophilic InteractionsIndolesPromoter Regions, GeneticProtein BindingAcidsBacterial Outer Membrane ProteinsBhsA protein, E coliCulture MediaCyclic AMP Receptor ProteinEscherichia coli ProteinsGlucoseHeat-Shock ProteinsHydrogen PeroxideindoleIndoles

Identifiers

PMID17293424
PMCPMC1855844
OpenAlexW2115214015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.