Evidence map›Paper›PMID 17293312›Full record

ArticleJournal of the Royal Society, Interface2007

Evolution of graded refractive index in squid lenses.

Alison M Sweeney, David L Des Marais, Yih-En Andrew Ban, Sönke Johnsen

Open access · greenAbstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Comparative analysis of the structure and crystallin composition of the lenses of freshwater fish and gastropods with respect to their vision.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The Pupillary Response of the Common Octopus (Frontiers in physiology · 2020
    Article
  8. The Eye of the Common Octopus (Frontiers in physiology · 2019
    Review
  9. The Proof Is in theACS central science · 2018
    Article
  10. A Complex Lens for a Complex Eye.Integrative and comparative biology · 2017
    Article
  11. Article
  12. Patchy proteins form a perfect lens.Science (New York, N.Y.) · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alison M SweeneyDepartment of Biology, Duke University, Durham, NC 27708, USA. ams27@duke.edu
David L Des Marais
Yih-En Andrew Ban
Sönke Johnsen
Duke University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A lens with a graded refractive index is required for vision in aquatic animals with camera-type eyes. This optical design entails a radial gradient of protein density, with low density in external layers and high density in internal layers. To maintain the optical stability of the eye, different material properties are required for proteins in different regions of the lens. In low-density regions of the lens where slight protein aggregation causes significant light scattering, aggregation must be minimized. Squid lens S-crystallin proteins are evolutionarily derived from the glutathione S-transferase protein family. We used biochemistry, optical modelling and phylogenetics to study the evolution and material properties of S-crystallins. S-crystallins are differentially expressed in a radial gradient, suggesting a role in refractive index. This gradient in S-crystallin expression is correlated with their evolutionary history and biochemistry. S-crystallins have been under positive selection. This selection appears to have resulted in stabilization of derived S-crystallins via mutations in the dimer interface and extended electrostatic fields. These derived S-crystallins probably cause the glassy organization and stability of low refractive index lens layers. Our work elucidates the molecular and evolutionary mechanisms underlying the production and maintenance of camera-like optics in squid lenses.

Indexed as

Biological EvolutionAmino Acid SequenceAnimalsCrystallinsDecapodiformesDimerizationGlutathione TransferaseLens, CrystallineMolecular Sequence DataPhylogenyRefractometrySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStatic ElectricityCrystallinsGlutathione Transferase

Identifiers

PMID17293312
PMCPMC2373386
OpenAlexW2152965010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.