Evidence map›Paper›PMID 17293139›Full record

ArticleJournal of magnetic resonance (San Diego, Calif. : 1997)2007

Triple resonance experiments for aligned sample solid-state NMR of (13)C and (15)N labeled proteins.

Neeraj Sinha, Christopher V Grant, Sang Ho Park, Jonathan Miles Brown, Stanley J Opella

Abstract readEvaluation Study
In one paragraph

Article in Journal of magnetic resonance (San Diego, Calif. : 1997), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Membrane protein structure from rotational diffusion.Biochimica et biophysica acta · 2015
    Review
  3. Structure determination of a membrane protein in proteoliposomes.Journal of the American Chemical Society · 2012
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. 1H-13C separated local field spectroscopy of uniformly 13C labeled peptides and proteins.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2010
    Article
  10. Article
  11. Article
  12. Labeling strategies for 13C-detected aligned-sample solid-state NMR of proteins.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2009
    Article
  13. Shiftless nuclear magnetic resonance spectroscopy.The Journal of chemical physics · 2008
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Neeraj SinhaDepartment of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, 0307 La Jolla, CA 92093-0307, USA.
Christopher V Grant
Sang Ho Park
Jonathan Miles Brown
Stanley J Opella
University of California, San Diego · US

Funding

RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
Membrane Protein Structural Genomics: M. tuberculosisP01GM064676 · NIGMS · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 2001 to 2005
$8.0M
Molecular Imaging of G-Protein-Coupled Receptors for Drug DevelopmentR01EB005161 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2006 to 2014
$6.8M
Structure, Dynamics, and Functions of the Viroporins Vpu from HIV and p7 from HCVR01GM066978 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2016
$3.5M
NMR Studies of Biological Supramolecular StructuresR01EB001966 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2004 to 2007
$1.6M
Membrane Protein Structures:Phospholipid Bilayers (RMI)R01GM075877 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2005 to 2009
$1.4M
NIBIB NIH HHS P41 EB002031NIBIB NIH HHS P41EB002031NIBIB NIH HHS R01 EB001966NIBIB NIH HHS R01 EB005161NIBIB NIH HHS R01EB01966NIGMS NIH HHS P01 GM064676NIGMS NIH HHS R01GM064676NIGMS NIH HHS R01 GM066978NIGMS NIH HHS R01GM066978NIGMS NIH HHS R01 GM075877
6 · The paper itself

Abstract

Initial steps in the development of a suite of triple-resonance (1)H/(13)C/(15)N solid-state NMR experiments applicable to aligned samples of (13)C and (15)N labeled proteins are described. The experiments take advantage of the opportunities for (13)C detection without the need for homonuclear (13)C/(13)C decoupling presented by samples with two different patterns of isotopic labeling. In one type of sample, the proteins are approximately 20% randomly labeled with (13)C in all backbone and side chain carbon sites and approximately 100% uniformly (15)N labeled in all nitrogen sites; in the second type of sample, the peptides and proteins are (13)C labeled at only the alpha-carbon and (15)N labeled at the amide nitrogen of a few residues. The requirement for homonuclear (13)C/(13)C decoupling while detecting (13)C signals is avoided in the first case because of the low probability of any two (13)C nuclei being bonded to each other; in the second case, the labeled (13)C(alpha) sites are separated by at least three bonds in the polypeptide chain. The experiments enable the measurement of the (13)C chemical shift and (1)H-(13)C and (15)N-(13)C heteronuclear dipolar coupling frequencies associated with the (13)C(alpha) and (13)C' backbone sites, which provide orientation constraints complementary to those derived from the (15)N labeled amide backbone sites. (13)C/(13)C spin-exchange experiments identify proximate carbon sites. The ability to measure (13)C-(15)N dipolar coupling frequencies and correlate (13)C and (15)N resonances provides a mechanism for making backbone resonance assignments. Three-dimensional combinations of these experiments ensure that the resolution, assignment, and measurement of orientationally dependent frequencies can be extended to larger proteins. Moreover, measurements of the (13)C chemical shift and (1)H-(13)C heteronuclear dipolar coupling frequencies for nearly all side chain sites enable the complete three-dimensional structures of proteins to be determined with this approach.

Indexed as

AlgorithmsCarbon IsotopesComputer SimulationCrystallizationIsotope LabelingMagnetic Resonance SpectroscopyModels, ChemicalModels, MolecularNitrogen IsotopesProtein ConformationProteinsCarbon IsotopesNitrogen IsotopesProteins

Identifiers

PMID17293139
PMCPMC3760591
OpenAlexW2058233499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.