Evidence map›Paper›PMID 17289588›Full record

ArticleMolecular cell2007

Proline cis-trans isomerization controls autoinhibition of a signaling protein.

Paramita Sarkar, Charles Reichman, Tamjeed Saleh, Raymond B Birge, Charalampos G Kalodimos

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 185 citations in OpenAlex.

  1. Article
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  4. A tethering mechanism underlies Pin1-catalyzed prolineProceedings of the National Academy of Sciences of the United States of America · 2025
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  6. ProlineJournal of the American Chemical Society · 2025
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  8. Temperature-dependent fold-switching mechanism of the circadian clock protein KaiB.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  12. SelectiveAngewandte Chemie (International ed. in English) · 2022
    Article
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  16. Investigation of theRSC advances · 2020
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  17. Article
  18. Review
  19. Review
  20. Monitoring the stabilities of a mixture of peptides by mass-spectrometry-based techniques.European journal of mass spectrometry (Chichester, England) · 2019
    Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Paramita SarkarDepartment of Chemistry, Rutgers University, Newark, NJ 07102, USA.
Charles Reichman
Tamjeed Saleh
Raymond B Birge
Charalampos G Kalodimos
Rutgers, The State University of New Jersey · US

Funding

SYNTHESIS OF POLYPROPIONATE DERIVED NATURAL PRODUCTSR01GM055740 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI PANEK, JAMES S. · 1998 to 2007
$1.4M
IDENTIFICATION OF A NOVEL SIGNAL PATHWAY FOR NGFR01GM055760 · NIGMS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI BIRGE, RAYMOND B · 1999 to 2003
$1.1M
NIGMS NIH HHS GM-55740NIGMS NIH HHS R01 GM055740NIGMS NIH HHS R01 GM055760
6 · The paper itself

Abstract

Autoinhibition is being widely used in nature to repress otherwise constitutive protein activities and is typically regulated by extrinsic factors. Here we show that autoinhibition can be controlled by an intrinsic intramolecular switch afforded by prolyl cis-trans isomerization. We find that a proline on the linker tethering the two SH3 domains of the Crk adaptor protein interconverts between the cis and trans conformation. In the cis conformation, the two SH3 domains interact intramolecularly, thereby forming the basis of an autoinhibitory mechanism. Conversely, in the trans conformation Crk exists in an extended, uninhibited conformation that is marginally populated but serves to activate the protein upon ligand binding. Interconversion between the cis and trans, and, hence, of the autoinhibited and activated conformations, is accelerated by the action of peptidyl-prolyl isomerases. Proline isomerization appears to make an ideal switch that can regulate the kinetics of activation, thereby modulating the dynamics of signal response.

Indexed as

Amino Acid IsomerasesAnimalsChickensIsomerismKineticsLigandsModels, BiologicalNuclear Magnetic Resonance, BiomolecularProlineProtein ConformationProtein Structure, TertiaryProto-Oncogene Proteins c-crkThermodynamicsAmino Acid IsomerasesLigandsProlineProto-Oncogene Proteins c-crk

Identifiers

PMID17289588
PMCPMC2566824
OpenAlexW1974817548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.