Evidence map›Paper›PMID 17276475›Full record

ArticleVirology2007

Sequence and annotation of the 288-kb ATCV-1 virus that infects an endosymbiotic chlorella strain of the heliozoon Acanthocystis turfacea.

Lisa A Fitzgerald, Michael V Graves, Xiao Li, James Hartigan, Artur J P Pfitzner, Ella Hoffart, James L Van Etten

Erratum issuedOpen access · greenAbstract readComparative Study
In one paragraph

Article in Virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Genomics and evolutionary analysis ofJournal of virology · 2024
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Chloroviruses.Viruses · 2019
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Exploiting tRNAs to Boost Virulence.Life (Basel, Switzerland) · 2016
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Lisa A FitzgeraldDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588-0304, USA.
Michael V Graves
Xiao Li
James Hartigan
Artur J P Pfitzner
Ella Hoffart
James L Van Etten
University of Hohenheim · DEUniversity of Massachusetts Lowell · USUniversity of Nebraska–Lincoln · US

Funding

VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2009
$22.1M
GENOME AND GENETICS OF A EUKARYOTIC ALGAL VIRUSR01GM032441 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI VAN ETTEN, JAMES L · 1985 to 2009
$2.8M
NCRR NIH HHS P20 RR015635NCRR NIH HHS P20-RR15635NIGMS NIH HHS GM32441NIGMS NIH HHS R01 GM032441
6 · The paper itself

Abstract

Acanthocystis turfacea chlorella virus (ATCV-1), a prospective member of the family Phycodnaviridae, genus Chlorovirus, infects a unicellular, eukaryotic, chlorella-like green alga, Chlorella SAG 3.83, that is a symbiont in the heliozoon A. turfacea. The 288,047-bp ATCV-1 genome is the first virus to be sequenced that infects Chlorella SAG 3.83. ATCV-1 contains 329 putative protein-encoding and 11 tRNA-encoding genes. The protein-encoding genes are almost evenly distributed on both strands and intergenic space is minimal. Thirty-four percent of the viral gene products resemble entries in the public databases, including some that are unexpected for a virus. For example, these unique gene products include ribonucleoside-triphosphate reductase, dTDP-d-glucose 4,6 dehydratase, potassium ion transporter, aquaglyceroporin, and mucin-desulfating sulfatase. Comparison of ATCV-1 protein-encoding genes with the prototype chlorella virus PBCV-1 indicates that about 80% of the ATCV-1 genes are present in PBCV-1.

Indexed as

AnimalsBase SequenceChlorellaDNA, IntergenicDNA RepairDNA ReplicationDNA, ViralEnzymesEukaryotaGenome, ViralMolecular Sequence DataNucleotidesPhycodnaviridaeRNA, TransferSequence HomologySymbiosisDNA, IntergenicDNA, ViralEnzymesNucleotidesRNA, TransferViral Proteins

Identifiers

PMID17276475
PMCPMC2018652
OpenAlexW1971280598

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.