Evidence map›Paper›PMID 17267810›Full record

ArticleGenome research2007

Comparative sequence analyses reveal rapid and divergent evolutionary changes of the WFDC locus in the primate lineage.

Belen Hurle, Willie Swanson, NISC Comparative Sequencing Program, Eric D Green

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Correlated Gene Copy Number Changes in a Seminal Fluid Protein Network inbioRxiv : the preprint server for biology · 2025
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  9. Effects of alcohol on c-Myc protein in the brain.Behavioural brain research · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Belen HurleGenome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Willie Swanson
NISC Comparative Sequencing Program
Eric D Green
National Institutes of Health · USUniversity of Washington · US

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Multi-Species Comparative Sequencing of Targeted GenomicZ01HG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GREEN, ERIC · 2001 to 2008
$19.1M
Structural /Functional Analysis of Mammalian ChromosomesZ01HG000060 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GREEN, ERIC · 1995 to 2008
$6.8M
Structural and Functional Analysis of Mammalian ChromosomesZIAHG000060 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GREEN, ERIC · 2009 to 2010
$4.3M
Intramural NIH HHSNCCDPHP CDC HHS U48 DP000036NCCDPHP CDC HHS U48 DP000048
6 · The paper itself

Abstract

The initial comparison of the human and chimpanzee genome sequences revealed 16 genomic regions with an unusually high density of rapidly evolving genes. One such region is the whey acidic protein (WAP) four-disulfide core domain locus (or WFDC locus), which contains 14 WFDC genes organized in two subloci on human chromosome 20q13. WAP protease inhibitors have roles in innate immunity and/or the regulation of a group of endogenous proteolytic enzymes called kallikreins. In human, the centromeric WFDC sublocus also contains the rapidly evolving seminal genes, semenogelin 1 and 2 (SEMG1 and SEMG2). The rate of SEMG2 evolution in primates has been proposed to correlate with female promiscuity and semen coagulation, perhaps related to post-copulatory sperm competition. We mapped and sequenced the centromeric WFDC sublocus in 12 primate species that collectively represent four different mating systems. Our analyses reveal a 130-kb region with a notably complex evolutionary history that has included nested duplications, deletions, and significant interspecies divergence of both coding and noncoding sequences; together, this has led to striking differences of this region among primates and between primates and rodents. Further, this region contains six closely linked genes (WFDC12, PI3, SEMG1, SEMG2, SLPI, and MATN4) that show strong patterns of adaptive selection, although an unambiguous correlation between gene mutation rates and mating systems could not be established.

Indexed as

Evolution, MolecularGenetic VariationSelection, GeneticAnimalsBase SequenceChromosome MappingChromosomes, Human, Pair 20ElafinFemaleHumansMaleMilk ProteinsMolecular Sequence DataMultigene FamilyPrimatesProtein PrecursorsElafinMilk ProteinsPI3 protein, humanProtein PrecursorsSeminal Vesicle Secretory Proteinsseminal vesicle-specific antigenwhey acidic proteins

Identifiers

PMID17267810
PMCPMC1800918
OpenAlexW2164766734

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.